Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilAI   Type   Machinery gene
Locus tag   PA5486_RS28410 Genome accession   NZ_LS998783
Coordinates   5801356..5801820 (-) Length   154 a.a.
NCBI ID   WP_023129290.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa isolate     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5796356..5806820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PA5486_RS28395 (PA5486_05520) nadC 5798856..5799704 (+) 849 WP_003116246.1 carboxylating nicotinate-nucleotide diphosphorylase -
  PA5486_RS28405 (PA5486_05522) - 5799885..5801198 (-) 1314 WP_015648064.1 O-antigen ligase family protein -
  PA5486_RS28410 (PA5486_05523) pilA/pilAI 5801356..5801820 (-) 465 WP_023129290.1 pilin Machinery gene
  PA5486_RS28415 (PA5486_05524) pilB 5802051..5803751 (+) 1701 WP_030048379.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PA5486_RS28420 (PA5486_05525) - 5803822..5804838 (+) 1017 WP_032728035.1 IS30-like element IS1394 family transposase -
  PA5486_RS28425 (PA5486_05526) pilC 5804816..5806075 (+) 1260 WP_134163279.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16148.47 Da        Isoelectric Point: 8.9986

>NTDB_id=1027146 PA5486_RS28410 WP_023129290.1 5801356..5801820(-) (pilA/pilAI) [Pseudomonas aeruginosa isolate]
MKAQKGFTLIELMIVVAIIGILAAIAIPQYQDYTARTQVTRAVSEISALKTAAESAILEGKKLVSNDSPKNDEYDLGFTS
STLLTGDGKGQIKIDKADTATPEISGTLGRSSGKGIAGAVITVKRDDKGVWTCGITGSPTNWKANYAPANCPKS

Nucleotide


Download         Length: 465 bp        

>NTDB_id=1027146 PA5486_RS28410 WP_023129290.1 5801356..5801820(-) (pilA/pilAI) [Pseudomonas aeruginosa isolate]
ATGAAAGCTCAGAAGGGTTTTACTCTGATCGAACTGATGATCGTGGTCGCGATCATCGGCATCCTGGCCGCCATTGCCAT
CCCGCAATATCAGGACTACACCGCCCGTACCCAGGTGACCCGTGCCGTGAGTGAAATCAGCGCGCTGAAGACCGCTGCGG
AGTCGGCGATTCTGGAAGGCAAGAAGCTCGTTTCCAACGATTCTCCCAAAAACGATGAGTATGATCTTGGCTTTACCAGT
TCTACTCTGCTTACCGGTGACGGTAAGGGGCAGATCAAGATTGACAAAGCTGATACCGCAACTCCGGAGATTTCTGGTAC
CTTGGGCCGCTCTTCTGGTAAAGGTATTGCTGGCGCTGTCATCACTGTCAAGCGTGATGATAAAGGAGTATGGACCTGCG
GCATCACTGGTTCGCCGACCAACTGGAAAGCCAACTACGCTCCGGCCAATTGCCCGAAATCCTAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(35-151)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilAI Pseudomonas stutzeri DSM 10701

44.516

100

0.448
  pilA Acinetobacter baumannii strain A118

42.857

100

0.429
  pilA Pseudomonas aeruginosa PAK

41.139

100

0.422
  pilA Ralstonia pseudosolanacearum GMI1000

37.059

100

0.409
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

39.073

98.052

0.383
  pilA Vibrio cholerae strain A1552

39.073

98.052

0.383
  pilA Vibrio cholerae C6706

39.073

98.052

0.383
  pilA2 Legionella pneumophila str. Paris

37.838

96.104

0.364