Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   AB4P92_RS13100 Genome accession   NZ_CP162581
Coordinates   2856093..2858168 (-) Length   691 a.a.
NCBI ID   WP_395599503.1    Uniprot ID   -
Organism   Pseudomonas sp. A0308     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2851093..2863168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4P92_RS13085 (AB4P92_13070) - 2852715..2854307 (-) 1593 WP_395599502.1 AAA family ATPase -
  AB4P92_RS13090 (AB4P92_13075) aroB 2854318..2855418 (-) 1101 WP_047299400.1 3-dehydroquinate synthase -
  AB4P92_RS13095 (AB4P92_13080) aroK 2855570..2856088 (-) 519 WP_042557267.1 shikimate kinase AroK -
  AB4P92_RS13100 (AB4P92_13085) pilQ 2856093..2858168 (-) 2076 WP_395599503.1 type IV pilus secretin PilQ Machinery gene
  AB4P92_RS13105 (AB4P92_13090) - 2858182..2858709 (-) 528 WP_395599504.1 pilus assembly protein PilP -
  AB4P92_RS13110 (AB4P92_13095) pilO 2858706..2859329 (-) 624 WP_042557264.1 type 4a pilus biogenesis protein PilO -
  AB4P92_RS13115 (AB4P92_13100) - 2859326..2859892 (-) 567 WP_042557263.1 PilN domain-containing protein -
  AB4P92_RS13120 (AB4P92_13105) pilM 2859892..2860956 (-) 1065 WP_042557262.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 691 a.a.        Molecular weight: 74917.40 Da        Isoelectric Point: 5.5789

>NTDB_id=1027147 AB4P92_RS13100 WP_395599503.1 2856093..2858168(-) (pilQ) [Pseudomonas sp. A0308]
MNRIFSTLGFSLWIALLSPMVQAANLKALDVAALPGDRVELKLSFDGPPPQPKGYTTESPARIALDLPGVASQLASKNLD
LGSGNARTATVVEAKDRTRLIVSLTQLAPYDTRVEGNYLFVVVGQGAPAKAPRPAVAAPRASTPAAPAKAFVAKPRAIRG
VDFQRGTAGEGNVVIDLSDPTIAPDIQEHDGKIILSFARTQLPEKLRVRLDVKDFATPVQFVNAGVTGDRTVITVEPSGT
FDYSTFQTDNKLTVSIRPMTVDDLQKRNADRQAYVGEKLSLNFQDIDVRSVLQLIADFTNLNLVASDTVQGGITLRLQNV
PWDQALDLVLKTKGLDKRKIGNVLLVAPADEIAARERQELESQKQIAELAPLRRELLQVNYAKAADIAKLFQSVTSAEAK
IDERGSITVDERTNNIIAYQTQDRLDELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLGVRWGGSIQNKGNWNASGVNG
SSTTIGTPGSTSTNSPFVDMGTVGNTSGIGIAFITDNVLLDLELTAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQ
EASSSGATSVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNKVQDVPPIKKNEVNAKVLVNDGETIVIGGVFSNT
QSKVVDKVPFLGDVPYLGRLFRRDVVSEKKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 2076 bp        

>NTDB_id=1027147 AB4P92_RS13100 WP_395599503.1 2856093..2858168(-) (pilQ) [Pseudomonas sp. A0308]
ATGAACAGGATTTTCTCCACCCTCGGTTTTTCGCTATGGATAGCGCTGTTGTCACCGATGGTACAGGCGGCCAACTTGAA
GGCGCTGGATGTGGCAGCGTTGCCCGGTGATCGCGTCGAACTGAAGCTGTCGTTCGACGGCCCGCCGCCGCAGCCCAAGG
GTTACACCACCGAGTCACCGGCGCGAATTGCGCTGGACTTGCCCGGTGTGGCCAGTCAGTTGGCGAGCAAAAATCTCGAT
CTGGGCAGTGGCAATGCGCGCACGGCCACGGTGGTTGAAGCCAAGGACCGCACGCGGCTGATTGTCAGTCTCACGCAATT
GGCGCCTTACGACACACGGGTTGAGGGCAACTATCTGTTCGTGGTGGTTGGTCAGGGCGCGCCGGCCAAGGCGCCGCGAC
CGGCAGTGGCGGCACCACGCGCGTCGACTCCTGCTGCGCCCGCCAAGGCGTTCGTGGCGAAACCCCGCGCCATTCGCGGT
GTGGATTTTCAGCGCGGTACTGCGGGCGAGGGCAATGTCGTCATCGACCTGTCCGACCCGACCATCGCCCCGGATATCCA
GGAGCATGACGGCAAGATCATCCTCAGCTTCGCCCGTACGCAATTGCCGGAAAAGCTGCGGGTGCGTCTCGACGTGAAGG
ATTTCGCCACGCCAGTGCAATTCGTCAACGCCGGCGTAACCGGTGATCGCACGGTCATTACCGTCGAGCCCAGCGGCACC
TTTGACTATTCCACGTTCCAGACCGATAACAAACTGACCGTCAGCATCCGTCCGATGACCGTCGACGACCTGCAAAAACG
CAACGCCGATCGTCAGGCCTATGTCGGTGAAAAGCTCTCGCTGAATTTCCAGGACATTGACGTGCGCTCGGTGCTGCAAC
TGATCGCCGACTTCACCAACCTCAATCTGGTGGCGAGCGACACGGTGCAGGGCGGCATCACCCTGCGTTTGCAAAACGTG
CCGTGGGATCAGGCGCTGGATCTGGTGCTGAAGACCAAAGGCCTGGATAAACGCAAAATCGGTAATGTGCTGTTGGTGGC
CCCGGCTGATGAAATTGCTGCGCGCGAACGTCAGGAGCTGGAGTCGCAGAAGCAGATTGCCGAACTGGCGCCGCTGCGTC
GTGAGCTGTTGCAGGTGAACTATGCCAAGGCTGCGGACATCGCCAAGTTGTTCCAGTCGGTGACCAGCGCCGAGGCCAAG
ATCGACGAGCGTGGATCAATCACTGTCGACGAACGGACCAACAACATCATTGCCTACCAGACTCAGGATCGTCTCGACGA
GCTGCGGCGGATCGTGGCGCAACTGGATATTCCAGTGCGTCAGGTGATGATCGAGGCGCGCATCGTCGAGGCCAACGTCG
ATTACGACAAGAGTCTGGGGGTGCGCTGGGGCGGCTCGATCCAGAACAAGGGCAACTGGAATGCTTCCGGGGTCAACGGT
TCATCGACCACCATCGGCACGCCGGGCAGCACCAGTACCAACTCGCCGTTCGTCGACATGGGGACTGTCGGCAATACTTC
CGGGATCGGTATCGCGTTCATTACCGACAACGTTTTGCTCGATCTGGAGCTGACGGCCATGGAGAAGACCGGCAACGGTG
AAATCGTTTCGCAGCCCAAAGTGGTCACCTCCGACAAAGAGACCGCGAAGATCCTCAAAGGCACCGAGATTCCTTACCAG
GAAGCCAGCTCCAGCGGCGCCACGTCGGTGTCGTTCAAAGAGGCTTCGCTGTCGCTGGAAGTGACCCCGCAGATCACCCC
GGATAACCGCATCATCATGGAGGTCAAGGTCACCAAGGACGAACCGGATTACCTGAACAAAGTGCAGGATGTACCGCCGA
TCAAAAAGAACGAGGTCAACGCCAAAGTGCTGGTCAATGATGGCGAAACCATCGTGATTGGCGGTGTTTTCTCAAATACT
CAGAGCAAGGTTGTAGATAAGGTGCCATTTCTTGGCGATGTGCCGTATCTTGGCCGCCTTTTCCGGCGTGATGTGGTTTC
GGAGAAAAAATCCGAGCTGCTGGTATTTCTCACTCCGCGTATCATGAATAACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(302-348)

Bacterial type II and III secretion system protein (Secretin)

(526-682)

Bacterial type II/III secretion system short domain (Secretin_N)

(376-441)

AMIN domain (AMIN)

(37-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

72.587

100

0.751
  pilQ Acinetobacter baumannii D1279779

38.493

100

0.414
  pilQ Acinetobacter baumannii strain A118

38.493

100

0.414
  comQ Acinetobacter baylyi ADP1

41.126

100

0.412
  pilQ Legionella pneumophila strain ERS1305867

38.166

97.829

0.373
  pilQ Legionella pneumophila strain Lp02

38.166

97.829

0.373

Multiple sequence alignment