Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AB3X10_RS05755 Genome accession   NZ_CP162487
Coordinates   1352399..1353661 (-) Length   420 a.a.
NCBI ID   WP_369979837.1    Uniprot ID   -
Organism   Xanthomonas bundabergensis strain DAR 80977     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1347399..1358661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3X10_RS05730 (AB3X10_05720) - 1348306..1348764 (+) 459 WP_369979832.1 hypothetical protein -
  AB3X10_RS05735 (AB3X10_05725) - 1348779..1349456 (+) 678 WP_145703507.1 response regulator transcription factor -
  AB3X10_RS05740 (AB3X10_05730) - 1349449..1350783 (+) 1335 WP_369979833.1 sensor histidine kinase -
  AB3X10_RS05745 (AB3X10_05735) coaE 1350896..1351516 (-) 621 WP_369979834.1 dephospho-CoA kinase -
  AB3X10_RS05750 (AB3X10_05740) - 1351529..1352392 (-) 864 WP_179566660.1 prepilin peptidase -
  AB3X10_RS05755 (AB3X10_05745) pilC 1352399..1353661 (-) 1263 WP_369979837.1 type II secretion system F family protein Machinery gene
  AB3X10_RS05760 (AB3X10_05750) pilA 1354042..1354476 (+) 435 WP_369979839.1 pilin Machinery gene
  AB3X10_RS05765 (AB3X10_05755) pilB 1355299..1357035 (+) 1737 WP_369979840.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AB3X10_RS05770 (AB3X10_05760) pilR 1357200..1358588 (-) 1389 WP_369979842.1 sigma-54-dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45894.28 Da        Isoelectric Point: 10.1706

>NTDB_id=1026410 AB3X10_RS05755 WP_369979837.1 1352399..1353661(-) (pilC) [Xanthomonas bundabergensis strain DAR 80977]
MSATRSAVKKEPMTRTVVSQQVPFVWEGVDKRGVKMKGEQTAKNANLLRAELRRQGITPSVVKPKPKPLFGSAGSKITPK
DIAFFSRQMATMMKSGVPIVGSLEIIASGHKNPRMKKMVDQIRTDIEGGSSLYEAISKHPVQFDELYRNLVKAGEGAGVL
ETVLETVATYKENIEALKGKIKKALFYPAMVMAVALLVSSILLVWVVPQFEDVFKGFGAELPAFTQMIVSASRFMVAYWW
IVLFILIGSIGSLVFAYKRSPSMQHGMDRLILKVPIIGQIMHNSSVARFSRTLGVTFRAGVPLVEALDIVAGATGNSVYE
KAVLRMRDDVSVGYPVNVAMKQANLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTI
VGGMVIGMYLPIFKLAAVVG

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=1026410 AB3X10_RS05755 WP_369979837.1 1352399..1353661(-) (pilC) [Xanthomonas bundabergensis strain DAR 80977]
ATGTCCGCAACTCGTAGCGCAGTCAAGAAAGAGCCAATGACCCGCACTGTCGTCAGCCAGCAGGTCCCGTTTGTCTGGGA
GGGGGTGGACAAACGCGGCGTCAAGATGAAGGGTGAGCAGACCGCCAAGAACGCCAACCTGTTGCGTGCGGAATTGCGCC
GCCAGGGCATCACGCCGTCGGTGGTCAAGCCGAAACCCAAGCCCCTGTTCGGCTCTGCCGGCAGCAAGATCACCCCGAAG
GACATCGCCTTTTTCAGCCGCCAGATGGCGACCATGATGAAATCGGGCGTTCCGATCGTGGGATCACTGGAGATCATCGC
CAGCGGTCATAAGAACCCGCGCATGAAGAAAATGGTCGACCAGATCCGCACTGACATCGAGGGAGGCTCATCGCTCTATG
AGGCAATAAGCAAGCATCCAGTCCAGTTCGATGAACTTTATCGCAACCTGGTCAAGGCCGGAGAAGGTGCCGGCGTGCTC
GAAACCGTGCTTGAGACGGTCGCGACCTACAAGGAAAACATCGAAGCACTGAAGGGCAAGATCAAAAAGGCGTTGTTTTA
CCCGGCCATGGTTATGGCGGTCGCGTTGCTGGTCAGCTCGATCCTGCTGGTGTGGGTGGTGCCGCAGTTCGAGGATGTAT
TCAAGGGCTTTGGCGCCGAGTTGCCAGCCTTTACACAGATGATCGTATCCGCTTCACGCTTCATGGTTGCCTATTGGTGG
ATCGTGTTGTTCATCTTGATTGGCAGCATCGGCAGCTTGGTCTTCGCCTACAAGCGTTCCCCTTCGATGCAGCACGGCAT
GGACCGGCTGATACTGAAGGTCCCGATCATCGGCCAGATCATGCACAACAGCTCGGTGGCGCGCTTCTCGCGAACGCTAG
GCGTGACCTTCCGTGCCGGCGTCCCGCTGGTAGAGGCCCTCGACATCGTCGCCGGCGCCACCGGCAACAGCGTCTACGAG
AAAGCCGTGCTGCGCATGCGCGACGACGTCTCGGTGGGCTATCCGGTCAACGTGGCGATGAAGCAGGCCAACCTGTTTCC
GCACATGGTCATCCAGATGACCGCCATCGGCGAAGAGGCCGGTGCGCTGGATGCGATGCTGTTCAAGGTGGCCGAGTACT
TCGAGCAGGAAGTGAACAATGCGGTCGATGCGTTGAGCAGCCTGCTCGAGCCGCTGATCATGGTGTTCATCGGCACCATC
GTCGGCGGCATGGTCATCGGCATGTACCTGCCCATCTTCAAGCTGGCAGCAGTCGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(289-411)

Type II secretion system (T2SS), protein F (T2SSF)

(85-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

51.208

98.571

0.505
  pilC Pseudomonas stutzeri DSM 10701

53.283

94.286

0.502
  pilC Legionella pneumophila strain ERS1305867

53.03

94.286

0.5
  pilC Acinetobacter baylyi ADP1

50.868

95.952

0.488
  pilG Neisseria gonorrhoeae MS11

42.965

94.762

0.407
  pilC Vibrio cholerae strain A1552

42.118

96.667

0.407
  pilG Neisseria meningitidis 44/76-A

42.714

94.762

0.405
  pilC Vibrio campbellii strain DS40M4

39.409

96.667

0.381

Multiple sequence alignment