Detailed information NTG1026413

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: AB3X10_RS05770
• Genome accession: NZ_CP162487
• Coordinates: 1357200..1358588 (-)
• Length: 462 a.a.
• NCBI ID: WP_369979842.1
• Uniprot ID: -
• Organism: Xanthomonas bundabergensis strain DAR 80977
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1352200..1363588

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB3X10_RS05755 (AB3X10_05745)	pilC	1352399..1353661 (-)	1263	WP_369979837.1	type II secretion system F family protein	Machinery gene
AB3X10_RS05760 (AB3X10_05750)	pilA	1354042..1354476 (+)	435	WP_369979839.1	pilin	Machinery gene
AB3X10_RS05765 (AB3X10_05755)	pilB	1355299..1357035 (+)	1737	WP_369979840.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AB3X10_RS05770 (AB3X10_05760)	pilR	1357200..1358588 (-)	1389	WP_369979842.1	sigma-54-dependent transcriptional regulator	Regulator
AB3X10_RS05775 (AB3X10_05765)	-	1358663..1360276 (-)	1614	WP_369979844.1	sensor histidine kinase	-
AB3X10_RS05780 (AB3X10_05770)	sucC	1360576..1361739 (+)	1164	WP_369979846.1	ADP-forming succinate--CoA ligase subunit beta	-
AB3X10_RS05785 (AB3X10_05775)	sucD	1361763..1362635 (+)	873	WP_369979848.1	succinate--CoA ligase subunit alpha	-

Sequence

Protein

• Length: 462 a.a.
• Molecular weight: 49858.32 Da
• Isoelectric Point: 6.6700

>NTDB_id=1026413 AB3X10_RS05770 WP_369979842.1 1357200..1358588(-) (pilR) [Xanthomonas bundabergensis strain DAR 80977]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIARHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIHVLRGLVKHALELNNSERAAPPPAPPEQASRLLGASATMDVLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLPMQVKLLRAIQEKSVRPVGASTEVPTDVRILSATHKDLADLVADGRFRHDLYYRINVIELRVPPLRDRGGDLP
QLAAAILARLAKSHGRITPLLSPSALDALNRYAFPGNVRELENILERALAMAEDDQISAADLRLPQPGNSARAAAEAAPA
LPPGVVDIDPTSAALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1389 bp

>NTDB_id=1026413 AB3X10_RS05770 WP_369979842.1 1357200..1358588(-) (pilR) [Xanthomonas bundabergensis strain DAR 80977]
ATGAACGAAACCCGAAGCGCCCTTGTCGTCGATGACGAGCGCGACATCCGCGAGCTGCTGGTGCTGACCCTGGGCAGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCCCGCGAACTGTTGGCGAGCAATCCCTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAGCTGGTCAGCGAGATCGCGCGCCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCCACGTGCTGCGCGGCCTGGTCAAGCATGCGCTGGAACTCAACAACAGCGAGCGCGCCGCGCCGCCGCCGGCGC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGCCTCGGCCACGATGGACGTGCTGCGCGCCACCATCGCCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCCTCGGCGAGTCCGGCGTCGGCAAGGAACTGGTCGCGCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCCCACGCCGACCAGGCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCCTGTTCCTGGAC
GAAGTCGCCGAACTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGCCCGGTCGGCGC
CTCGACCGAAGTGCCGACCGACGTGCGCATCCTCTCGGCCACGCACAAGGACCTGGCCGACCTGGTCGCCGACGGCCGTT
TCCGCCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGACCGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCGATCCTGGCGCGACTGGCCAAGAGCCATGGCCGGATCACCCCGCTGCTGTCGCCGTCGGCGCTGGA
CGCGCTGAACCGCTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTCGAACGCGCCCTGGCGATGGCCGAAG
ACGACCAGATCAGCGCCGCCGACCTGCGCCTGCCGCAACCCGGCAACAGTGCGCGCGCCGCGGCCGAAGCCGCCCCCGCG
CTGCCGCCCGGCGTGGTGGACATCGACCCGACCTCCGCCGCCCTGCCCTCCTACATCGAGCAGCTCGAGCGCGCCGCGAT
CCAGAAGGCGCTGGAAGAGAACCGCTGGAACAAGACCCGCACCGCCGCGCAGCTAGGCATCACCTTCCGCGCGCTGCGCT
ACAAGCTCAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (8-114)

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

• Bacterial regulatory protein, Fis family (HTH_8) (419-459)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.309	99.351	0.619
pilR	Acinetobacter baumannii strain A118	46.868	100	0.47