Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | AB3429_RS10975 | Genome accession | NZ_CP162465 |
| Coordinates | 2201140..2201565 (+) | Length | 141 a.a. |
| NCBI ID | WP_015978401.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain TUM20825 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2193730..2235509 | 2201140..2201565 | within | 0 |
Gene organization within MGE regions
Location: 2193730..2235509
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB3429_RS10905 (AB3429_10905) | - | 2193730..2195115 (-) | 1386 | WP_000861313.1 | recombinase family protein | - |
| AB3429_RS10910 (AB3429_10910) | - | 2195322..2196002 (-) | 681 | WP_000392106.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| AB3429_RS10915 (AB3429_10915) | - | 2196118..2196663 (-) | 546 | WP_261921311.1 | Ltp family lipoprotein | - |
| AB3429_RS10920 (AB3429_10920) | - | 2196714..2197346 (-) | 633 | WP_000901358.1 | LexA family transcriptional regulator | - |
| AB3429_RS10925 (AB3429_10925) | - | 2197500..2197727 (+) | 228 | WP_000192117.1 | helix-turn-helix transcriptional regulator | - |
| AB3429_RS10930 (AB3429_10930) | - | 2197750..2198523 (+) | 774 | WP_001148549.1 | phage antirepressor KilAC domain-containing protein | - |
| AB3429_RS10935 (AB3429_10935) | - | 2198524..2198748 (+) | 225 | WP_000187184.1 | type II toxin-antitoxin system antitoxin TscA | - |
| AB3429_RS10940 (AB3429_10940) | - | 2198788..2198931 (+) | 144 | WP_000939498.1 | hypothetical protein | - |
| AB3429_RS10945 (AB3429_10945) | - | 2198953..2199600 (-) | 648 | WP_086153461.1 | hypothetical protein | - |
| AB3429_RS10950 (AB3429_10950) | - | 2199650..2199787 (+) | 138 | WP_000230552.1 | hypothetical protein | - |
| AB3429_RS10955 (AB3429_10955) | - | 2199780..2199941 (+) | 162 | WP_001668917.1 | DUF1270 family protein | - |
| AB3429_RS10960 (AB3429_10960) | - | 2200033..2200293 (+) | 261 | WP_000291089.1 | DUF1108 family protein | - |
| AB3429_RS10965 (AB3429_10965) | - | 2200303..2200524 (+) | 222 | WP_000815401.1 | DUF2483 family protein | - |
| AB3429_RS10970 (AB3429_10970) | - | 2200517..2201140 (+) | 624 | WP_000139720.1 | DUF1071 domain-containing protein | - |
| AB3429_RS10975 (AB3429_10975) | ssbA | 2201140..2201565 (+) | 426 | WP_015978401.1 | single-stranded DNA-binding protein | Machinery gene |
| AB3429_RS10980 (AB3429_10980) | - | 2201576..2202127 (+) | 552 | WP_001004506.1 | NUMOD4 domain-containing protein | - |
| AB3429_RS10985 (AB3429_10985) | - | 2202128..2202802 (+) | 675 | WP_029753391.1 | putative HNHc nuclease | - |
| AB3429_RS10990 (AB3429_10990) | - | 2202908..2203765 (-) | 858 | WP_000371250.1 | DUF4393 domain-containing protein | - |
| AB3429_RS10995 (AB3429_10995) | - | 2203830..2204600 (+) | 771 | WP_261921312.1 | conserved phage C-terminal domain-containing protein | - |
| AB3429_RS11000 (AB3429_11000) | - | 2204610..2205389 (+) | 780 | WP_001668921.1 | ATP-binding protein | - |
| AB3429_RS11005 (AB3429_11005) | - | 2205383..2205541 (+) | 159 | WP_000256597.1 | hypothetical protein | - |
| AB3429_RS11010 (AB3429_11010) | - | 2205554..2205775 (+) | 222 | WP_001123684.1 | DUF3269 family protein | - |
| AB3429_RS11015 (AB3429_11015) | - | 2205785..2206192 (+) | 408 | WP_000401950.1 | RusA family crossover junction endodeoxyribonuclease | - |
| AB3429_RS11020 (AB3429_11020) | - | 2206192..2206377 (+) | 186 | WP_001187264.1 | DUF3113 family protein | - |
| AB3429_RS11025 (AB3429_11025) | - | 2206378..2206737 (+) | 360 | WP_001668922.1 | SA1788 family PVL leukocidin-associated protein | - |
| AB3429_RS11030 (AB3429_11030) | - | 2206738..2206986 (+) | 249 | WP_001126846.1 | phi PVL orf 51-like protein | - |
| AB3429_RS11035 (AB3429_11035) | - | 2207001..2207237 (+) | 237 | WP_001065079.1 | DUF1024 family protein | - |
| AB3429_RS11040 (AB3429_11040) | - | 2207242..2207751 (+) | 510 | WP_000185636.1 | dUTP diphosphatase | - |
| AB3429_RS11045 (AB3429_11045) | - | 2207788..2207994 (+) | 207 | WP_000195785.1 | DUF1381 domain-containing protein | - |
| AB3429_RS11050 (AB3429_11050) | - | 2207991..2208185 (+) | 195 | WP_000132920.1 | hypothetical protein | - |
| AB3429_RS11055 (AB3429_11055) | - | 2208182..2208385 (+) | 204 | WP_261921313.1 | hypothetical protein | - |
| AB3429_RS11060 (AB3429_11060) | - | 2208378..2208551 (+) | 174 | WP_001657250.1 | transcriptional activator RinB | - |
| AB3429_RS11065 (AB3429_11065) | - | 2208552..2208953 (+) | 402 | WP_000286968.1 | hypothetical protein | - |
| AB3429_RS11070 (AB3429_11070) | - | 2209306..2209800 (+) | 495 | WP_000594079.1 | terminase small subunit | - |
| AB3429_RS11075 (AB3429_11075) | - | 2209793..2211016 (+) | 1224 | WP_338627878.1 | PBSX family phage terminase large subunit | - |
| AB3429_RS11080 (AB3429_11080) | - | 2211013..2212437 (+) | 1425 | WP_000177426.1 | phage portal protein | - |
| AB3429_RS11085 (AB3429_11085) | - | 2212406..2213359 (+) | 954 | WP_000184133.1 | phage head morphogenesis protein | - |
| AB3429_RS11090 (AB3429_11090) | - | 2213361..2213567 (+) | 207 | WP_000346033.1 | hypothetical protein | - |
| AB3429_RS11095 (AB3429_11095) | - | 2213670..2214254 (+) | 585 | WP_001019219.1 | DUF4355 domain-containing protein | - |
| AB3429_RS11100 (AB3429_11100) | - | 2214271..2215185 (+) | 915 | WP_000235168.1 | phage major capsid protein | - |
| AB3429_RS11105 (AB3429_11105) | - | 2215197..2215340 (+) | 144 | WP_000002931.1 | hypothetical protein | - |
| AB3429_RS11110 (AB3429_11110) | - | 2215346..2215696 (+) | 351 | WP_000177351.1 | phage head-tail adapter protein | - |
| AB3429_RS11115 (AB3429_11115) | - | 2215708..2216043 (+) | 336 | WP_000483041.1 | phage head closure protein | - |
| AB3429_RS11120 (AB3429_11120) | - | 2216030..2216443 (+) | 414 | WP_001151330.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| AB3429_RS11125 (AB3429_11125) | - | 2216456..2216881 (+) | 426 | WP_000270192.1 | DUF3168 domain-containing protein | - |
| AB3429_RS11130 (AB3429_11130) | - | 2216882..2217439 (+) | 558 | WP_000057583.1 | hypothetical protein | - |
| AB3429_RS11135 (AB3429_11135) | - | 2217506..2218012 (+) | 507 | WP_000134337.1 | tail assembly chaperone | - |
| AB3429_RS11140 (AB3429_11140) | - | 2218057..2218341 (+) | 285 | WP_000880587.1 | hypothetical protein | - |
| AB3429_RS11145 (AB3429_11145) | - | 2218345..2221230 (+) | 2886 | WP_368409628.1 | terminase | - |
| AB3429_RS11150 (AB3429_11150) | - | 2221245..2222186 (+) | 942 | WP_000560181.1 | phage tail domain-containing protein | - |
| AB3429_RS11155 (AB3429_11155) | - | 2222197..2224083 (+) | 1887 | WP_038412588.1 | SGNH/GDSL hydrolase family protein | - |
| AB3429_RS11160 (AB3429_11160) | - | 2224096..2225994 (+) | 1899 | WP_054189010.1 | hypothetical protein | - |
| AB3429_RS11165 (AB3429_11165) | - | 2225994..2227817 (+) | 1824 | WP_261921314.1 | phage baseplate upper protein | - |
| AB3429_RS11170 (AB3429_11170) | - | 2227817..2228194 (+) | 378 | WP_000705910.1 | DUF2977 domain-containing protein | - |
| AB3429_RS11175 (AB3429_11175) | - | 2228198..2228371 (+) | 174 | WP_001790193.1 | XkdX family protein | - |
| AB3429_RS11180 (AB3429_11180) | - | 2228412..2228712 (+) | 301 | Protein_2156 | DUF2951 domain-containing protein | - |
| AB3429_RS11185 (AB3429_11185) | - | 2228849..2230723 (+) | 1875 | WP_261921315.1 | glucosaminidase domain-containing protein | - |
| AB3429_RS11190 (AB3429_11190) | - | 2230736..2231974 (+) | 1239 | WP_117222187.1 | BppU family phage baseplate upper protein | - |
| AB3429_RS11195 (AB3429_11195) | - | 2231979..2232374 (+) | 396 | WP_042855627.1 | hypothetical protein | - |
| AB3429_RS11200 (AB3429_11200) | - | 2232430..2232867 (+) | 438 | WP_000354134.1 | phage holin | - |
| AB3429_RS11205 (AB3429_11205) | - | 2232848..2234293 (+) | 1446 | WP_338627880.1 | SH3 domain-containing protein | - |
| AB3429_RS11210 (AB3429_11210) | - | 2234952..2235509 (+) | 558 | WP_000528632.1 | PBECR4 domain-containing protein | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 15947.45 Da Isoelectric Point: 5.8790
>NTDB_id=1026129 AB3429_RS10975 WP_015978401.1 2201140..2201565(+) (ssbA) [Staphylococcus aureus strain TUM20825]
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENKDGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNNADSIEDLPF
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENKDGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNNADSIEDLPF
Nucleotide
Download Length: 426 bp
>NTDB_id=1026129 AB3429_RS10975 WP_015978401.1 2201140..2201565(+) (ssbA) [Staphylococcus aureus strain TUM20825]
ATGTTAAATAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCAAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGACGGGCAACGTGTATTTGTCACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAACAACGCAG
ACTCTATAGAGGATCTTCCTTTTTAG
ATGTTAAATAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCAAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGACGGGCAACGTGTATTTGTCACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAACAACGCAG
ACTCTATAGAGGATCTTCCTTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
74.576 |
83.688 |
0.624 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50 |
100 |
0.603 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
75.177 |
0.44 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
42.553 |
100 |
0.426 |
| ssbA | Streptococcus mutans UA159 |
41.844 |
100 |
0.418 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
45.763 |
83.688 |
0.383 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
45.763 |
83.688 |
0.383 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
44.915 |
83.688 |
0.376 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
44.915 |
83.688 |
0.376 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
44.915 |
83.688 |
0.376 |
| ssbB/cilA | Streptococcus mitis SK321 |
44.915 |
83.688 |
0.376 |