Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AB3489_RS14630 Genome accession   NZ_CP162385
Coordinates   2996679..2997083 (-) Length   134 a.a.
NCBI ID   WP_368293444.1    Uniprot ID   -
Organism   Dehalobacter sp. TBBPA1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2991679..3002083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3489_RS14605 (AB3489_14605) lonC 2992565..2994481 (-) 1917 WP_368293441.1 Lon family ATP-dependent protease -
  AB3489_RS14610 (AB3489_14610) rplI 2994515..2994961 (-) 447 WP_015044993.1 50S ribosomal protein L9 -
  AB3489_RS14615 (AB3489_14615) - 2994958..2995926 (-) 969 WP_368293442.1 DUF2232 domain-containing protein -
  AB3489_RS14620 (AB3489_14620) - 2995942..2996265 (-) 324 WP_015044995.1 MazG-like family protein -
  AB3489_RS14625 (AB3489_14625) rpsR 2996413..2996658 (-) 246 WP_015044996.1 30S ribosomal protein S18 -
  AB3489_RS14630 (AB3489_14630) ssbA 2996679..2997083 (-) 405 WP_368293444.1 single-stranded DNA-binding protein Machinery gene
  AB3489_RS14635 (AB3489_14635) rpsF 2997102..2997386 (-) 285 WP_015044998.1 30S ribosomal protein S6 -
  AB3489_RS14640 (AB3489_14640) ychF 2997523..2998623 (-) 1101 WP_368293445.1 redox-regulated ATPase YchF -
  AB3489_RS14645 (AB3489_14645) - 2998651..2998854 (-) 204 WP_015045000.1 DUF951 domain-containing protein -
  AB3489_RS14650 (AB3489_14650) - 2998873..2999538 (-) 666 WP_368293447.1 CvpA family protein -
  AB3489_RS14660 (AB3489_14660) - 3000228..3000446 (+) 219 WP_368293448.1 sulfurtransferase TusA family protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14840.66 Da        Isoelectric Point: 5.2044

>NTDB_id=1025000 AB3489_RS14630 WP_368293444.1 2996679..2997083(-) (ssbA) [Dehalobacter sp. TBBPA1]
MLNRVVLIGRLTKDPELRYTPNGVAVASFTLAVDRNYKNSQGEKETDFIPCVVFRQLAELCANYLAKGKLAAVDGRIQVR
SYDGQDGQKRWVTEVLGENVRFLSPKDNNAGASSAQNDFGSFAHEVSLDDDIPF

Nucleotide


Download         Length: 405 bp        

>NTDB_id=1025000 AB3489_RS14630 WP_368293444.1 2996679..2997083(-) (ssbA) [Dehalobacter sp. TBBPA1]
ATGTTGAATCGTGTAGTACTTATCGGGCGATTAACGAAAGACCCTGAGCTACGCTATACACCAAACGGTGTAGCTGTTGC
ATCTTTTACGCTAGCCGTCGACAGGAATTACAAGAACAGCCAGGGCGAGAAAGAAACGGATTTTATTCCATGCGTTGTTT
TTCGCCAGTTAGCTGAACTCTGCGCGAACTATTTGGCGAAAGGAAAACTGGCTGCAGTAGATGGCAGGATTCAGGTCCGC
TCTTATGACGGTCAGGATGGGCAAAAAAGATGGGTGACAGAGGTCTTGGGAGAGAACGTCAGATTTTTGAGTCCCAAAGA
CAATAATGCCGGAGCATCTTCAGCTCAAAATGATTTTGGTTCTTTTGCTCATGAAGTTAGTCTAGATGATGATATACCAT
TTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.421

79.851

0.522
  ssbB Bacillus subtilis subsp. subtilis str. 168

52.679

83.582

0.44
  ssbB/cilA Streptococcus pneumoniae TIGR4

40

100

0.418
  ssbB/cilA Streptococcus mitis SK321

39.286

100

0.41
  ssbB/cilA Streptococcus pneumoniae D39

39.286

100

0.41
  ssbB/cilA Streptococcus pneumoniae R6

39.286

100

0.41
  ssbB/cilA Streptococcus mitis NCTC 12261

39.286

100

0.41
  ssbB/cilA Streptococcus pneumoniae Rx1

39.286

100

0.41
  ssb Latilactobacillus sakei subsp. sakei 23K

50.943

79.104

0.403
  ssbA Streptococcus mutans UA159

38.519

100

0.388
  ssbB Streptococcus sobrinus strain NIDR 6715-7

37.037

100

0.373

Multiple sequence alignment