Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AB2S62_RS12480 Genome accession   NZ_CP162100
Coordinates   2787710..2788936 (+) Length   408 a.a.
NCBI ID   WP_367987323.1    Uniprot ID   -
Organism   Vibrio sp. NTOU-M3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2782710..2793936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2S62_RS12455 (AB2S62_12215) fldB 2783184..2783705 (+) 522 WP_367987318.1 flavodoxin FldB -
  AB2S62_RS12460 (AB2S62_12220) ampD 2783729..2784274 (-) 546 WP_367987319.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  AB2S62_RS12465 (AB2S62_12225) nadC 2784406..2785308 (+) 903 WP_367987320.1 carboxylating nicotinate-nucleotide diphosphorylase -
  AB2S62_RS12470 (AB2S62_12230) pilA 2785592..2785990 (+) 399 WP_367987321.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  AB2S62_RS12475 (AB2S62_12235) pilB 2785994..2787682 (+) 1689 WP_367987322.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AB2S62_RS12480 (AB2S62_12240) pilC 2787710..2788936 (+) 1227 WP_367987323.1 type II secretion system F family protein Machinery gene
  AB2S62_RS12485 (AB2S62_12245) pilD 2788996..2789874 (+) 879 WP_367987324.1 A24 family peptidase Machinery gene
  AB2S62_RS12490 (AB2S62_12250) coaE 2789876..2790484 (+) 609 WP_367987325.1 dephospho-CoA kinase -
  AB2S62_RS12495 (AB2S62_12255) zapD 2790518..2791258 (+) 741 WP_367987326.1 cell division protein ZapD -
  AB2S62_RS12500 (AB2S62_12260) yacG 2791330..2791527 (+) 198 WP_367987327.1 DNA gyrase inhibitor YacG -
  AB2S62_RS12505 (AB2S62_12265) rplS 2791611..2791964 (-) 354 WP_367987328.1 50S ribosomal protein L19 -
  AB2S62_RS12510 (AB2S62_12270) trmD 2792006..2792749 (-) 744 WP_367987329.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  AB2S62_RS12515 (AB2S62_12275) rimM 2792777..2793325 (-) 549 WP_367987330.1 ribosome maturation factor RimM -
  AB2S62_RS12520 (AB2S62_12280) rpsP 2793355..2793603 (-) 249 WP_005438039.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45412.82 Da        Isoelectric Point: 10.4523

>NTDB_id=1024050 AB2S62_RS12480 WP_367987323.1 2787710..2788936(+) (pilC) [Vibrio sp. NTOU-M3]
MRSRPQVQLKSYRWKGINSTGKLASGNMLAFSEIEVRDKLKEQHIQVKKLKKTGVSFITKATQRVKGKDITILTRQLATM
LVTGVPLVQALKLVGDNHKKAEMKSILSQITKGVEAGTPLSKAMRTASSHFDTLYIDLVATGEQSGNLPEVFERIATYRE
KSEQLRAKVIKALIYPSMVVLVALGVSYLMLTMVIPEFEAMFKGFGAELPWFTQQVLKLSHWVQAYSWMVVVAIFLAVLV
IKTMRKKSFRAKLHSSRLSLRIPIIGAVMSKASIAKFSRTLATSFSAGIPILTSLKTSAKTANNTHYQHAIDEVYRDTAA
GMPMYIAMRNTETFPEMVLQMIMIGEESGRLDDMLNKVATIYEFEIDNTVDNLGKILEPLIIVFLGIVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1024050 AB2S62_RS12480 WP_367987323.1 2787710..2788936(+) (pilC) [Vibrio sp. NTOU-M3]
ATGAGAAGCAGACCTCAAGTACAACTAAAAAGCTATCGCTGGAAAGGTATAAACAGTACCGGCAAACTTGCCTCCGGTAA
TATGTTGGCCTTTAGTGAAATTGAAGTAAGAGACAAACTCAAAGAGCAACACATTCAAGTGAAAAAGCTCAAAAAAACTG
GGGTGTCTTTTATCACTAAGGCTACACAGCGCGTCAAAGGCAAAGACATCACAATTTTGACCCGACAACTCGCCACAATG
CTGGTCACAGGCGTTCCTCTGGTACAAGCTTTAAAACTGGTCGGAGATAACCATAAAAAAGCCGAAATGAAGTCAATTTT
GTCTCAGATCACCAAAGGGGTTGAAGCCGGAACGCCACTGTCTAAAGCCATGCGTACCGCAAGCTCACATTTCGATACAC
TGTATATTGATTTAGTCGCTACCGGCGAACAATCCGGTAACCTACCCGAAGTTTTTGAGCGTATTGCAACTTATCGCGAA
AAATCGGAACAACTCAGAGCCAAAGTAATTAAGGCATTAATTTATCCCAGCATGGTGGTTCTTGTTGCATTAGGAGTGTC
CTACTTGATGCTGACCATGGTCATTCCCGAGTTCGAGGCGATGTTTAAAGGGTTTGGTGCAGAGCTTCCTTGGTTTACTC
AGCAAGTACTCAAACTTTCTCATTGGGTTCAAGCCTATAGTTGGATGGTTGTAGTGGCCATCTTCCTGGCTGTTTTGGTT
ATCAAAACGATGCGCAAAAAATCGTTTCGCGCCAAACTTCACAGTAGCCGACTTAGCCTTCGTATACCGATCATTGGGGC
CGTCATGTCTAAAGCCTCAATCGCCAAATTCAGCCGAACGCTTGCAACGAGCTTTAGTGCCGGCATTCCAATCTTAACCA
GCTTAAAAACTTCGGCCAAAACCGCCAACAACACACACTATCAACATGCCATTGATGAAGTCTATCGCGATACCGCAGCT
GGTATGCCAATGTATATCGCTATGCGTAATACAGAAACATTCCCCGAGATGGTGCTGCAAATGATCATGATAGGCGAAGA
GTCTGGCCGTTTAGATGATATGTTAAATAAGGTCGCCACCATCTACGAGTTTGAAATAGACAACACCGTTGATAACCTCG
GAAAAATACTAGAACCCTTAATCATCGTGTTCTTGGGCATTGTTGTCGGCGGGCTGGTTGTCGCAATGTACTTACCAATC
TTTAACTTAATGAGTGTATTGGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

81.618

100

0.816
  pilC Vibrio campbellii strain DS40M4

75

99.02

0.743
  pilC Acinetobacter baylyi ADP1

42.64

96.569

0.412
  pilC Acinetobacter baumannii D1279779

40.842

99.02

0.404
  pilC Legionella pneumophila strain ERS1305867

40.842

99.02

0.404
  pilG Neisseria gonorrhoeae MS11

41.103

97.794

0.402
  pilC Pseudomonas stutzeri DSM 10701

41.31

97.304

0.402
  pilG Neisseria meningitidis 44/76-A

40.852

97.794

0.4

Multiple sequence alignment