Detailed information NTG1024051

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB2S62_RS12485
• Genome accession: NZ_CP162100
• Coordinates: 2788996..2789874 (+)
• Length: 292 a.a.
• NCBI ID: WP_367987324.1
• Uniprot ID: -
• Organism: Vibrio sp. NTOU-M3
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2783996..2794874

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB2S62_RS12465 (AB2S62_12225)	nadC	2784406..2785308 (+)	903	WP_367987320.1	carboxylating nicotinate-nucleotide diphosphorylase	-
AB2S62_RS12470 (AB2S62_12230)	pilA	2785592..2785990 (+)	399	WP_367987321.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
AB2S62_RS12475 (AB2S62_12235)	pilB	2785994..2787682 (+)	1689	WP_367987322.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AB2S62_RS12480 (AB2S62_12240)	pilC	2787710..2788936 (+)	1227	WP_367987323.1	type II secretion system F family protein	Machinery gene
AB2S62_RS12485 (AB2S62_12245)	pilD	2788996..2789874 (+)	879	WP_367987324.1	A24 family peptidase	Machinery gene
AB2S62_RS12490 (AB2S62_12250)	coaE	2789876..2790484 (+)	609	WP_367987325.1	dephospho-CoA kinase	-
AB2S62_RS12495 (AB2S62_12255)	zapD	2790518..2791258 (+)	741	WP_367987326.1	cell division protein ZapD	-
AB2S62_RS12500 (AB2S62_12260)	yacG	2791330..2791527 (+)	198	WP_367987327.1	DNA gyrase inhibitor YacG	-
AB2S62_RS12505 (AB2S62_12265)	rplS	2791611..2791964 (-)	354	WP_367987328.1	50S ribosomal protein L19	-
AB2S62_RS12510 (AB2S62_12270)	trmD	2792006..2792749 (-)	744	WP_367987329.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
AB2S62_RS12515 (AB2S62_12275)	rimM	2792777..2793325 (-)	549	WP_367987330.1	ribosome maturation factor RimM	-
AB2S62_RS12520 (AB2S62_12280)	rpsP	2793355..2793603 (-)	249	WP_005438039.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 292 a.a.
• Molecular weight: 33167.50 Da
• Isoelectric Point: 7.1968

>NTDB_id=1024051 AB2S62_RS12485 WP_367987324.1 2788996..2789874(+) (pilD) [Vibrio sp. NTOU-M3]
MFSTELFEYYPWLFPIFASLFGLIVGSFLNVVIHRLPIMMEREWRQDCAESFPEYKIQPPQGTYNLSVPRSACPSCQSKL
RIIDNIPVLSWLILKGRCHHCQTKISARYPFVELLTAILCCTIALNFPFSGYAIALIFFTFVLISTTFIDFDTMLLPDQL
TLPLVWSGLALALFEVNPISLHDAVIGAMVGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQYLPMIILLSSL
VGLFFGLIQLRMQKKGIDKAFPFGPYLAIAGWLSMMWGESIMNWYLSSFIGI

Nucleotide

• Length: 879 bp

>NTDB_id=1024051 AB2S62_RS12485 WP_367987324.1 2788996..2789874(+) (pilD) [Vibrio sp. NTOU-M3]
ATGTTTTCAACGGAATTATTTGAATACTACCCTTGGCTTTTTCCTATATTCGCCAGCCTGTTTGGTTTGATCGTTGGCAG
TTTTCTCAACGTCGTGATCCATCGCTTGCCAATTATGATGGAACGAGAGTGGCGACAAGATTGTGCCGAGAGCTTCCCTG
AATATAAAATCCAGCCACCGCAAGGGACTTACAATTTGAGTGTGCCACGTTCAGCGTGCCCATCTTGTCAAAGTAAACTA
CGTATCATTGATAATATTCCCGTATTGAGTTGGTTGATACTCAAAGGCCGTTGTCACCATTGCCAGACTAAAATTTCTGC
GCGCTACCCTTTTGTAGAGCTGCTAACCGCAATCCTGTGTTGCACCATCGCTTTAAACTTTCCTTTTAGTGGCTATGCCA
TCGCTCTTATTTTTTTCACGTTTGTGTTAATCAGCACGACCTTTATTGATTTTGACACCATGCTATTGCCTGATCAGTTG
ACTCTGCCTTTAGTATGGTCAGGGCTGGCATTAGCTCTCTTTGAGGTAAACCCGATATCGCTTCATGATGCGGTTATTGG
TGCAATGGTTGGCTACCTTGCCTTGTGGAGTGTCTATTGGCTTTTTAAGTTGCTCACAGGTAAGGAAGGCATGGGATATG
GGGACTTTAAACTTCTCGCAGCCTTAGGAGCTTGGCTTGGTTGGCAATACTTACCAATGATCATTCTGCTTTCTTCTTTG
GTTGGGCTATTTTTTGGTCTGATACAACTACGAATGCAAAAAAAAGGCATCGATAAAGCCTTTCCATTTGGCCCTTACCT
TGCGATAGCTGGCTGGCTCAGTATGATGTGGGGAGAGAGTATCATGAATTGGTACTTATCCTCATTTATAGGAATTTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	71.528	98.63	0.705
pilD	Vibrio cholerae strain A1552	70.383	98.288	0.692
pilD	Acinetobacter baumannii D1279779	50.181	94.863	0.476
pilD	Acinetobacter nosocomialis M2	49.819	94.863	0.473
pilD	Neisseria gonorrhoeae MS11	44.948	98.288	0.442