Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   AB2S62_RS01325 Genome accession   NZ_CP162100
Coordinates   271097..272767 (+) Length   556 a.a.
NCBI ID   WP_374144809.1    Uniprot ID   -
Organism   Vibrio sp. NTOU-M3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 266097..277767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2S62_RS01305 (AB2S62_01065) pilM 268345..269340 (+) 996 WP_367987936.1 type IV pilus assembly protein PilM Machinery gene
  AB2S62_RS01310 (AB2S62_01070) pilN 269330..269920 (+) 591 WP_367987937.1 PilN domain-containing protein Machinery gene
  AB2S62_RS01315 (AB2S62_01075) pilO 269913..270503 (+) 591 WP_367987938.1 type 4a pilus biogenesis protein PilO Machinery gene
  AB2S62_RS01320 (AB2S62_01080) pilP 270493..271011 (+) 519 WP_367987939.1 pilus assembly protein PilP Machinery gene
  AB2S62_RS01325 (AB2S62_01085) pilQ 271097..272767 (+) 1671 WP_374144809.1 type IV pilus secretin PilQ Machinery gene
  AB2S62_RS01330 (AB2S62_01090) aroK 272943..273461 (+) 519 WP_367987941.1 shikimate kinase AroK -
  AB2S62_RS01335 (AB2S62_01095) aroB 273495..274589 (+) 1095 WP_367987942.1 3-dehydroquinate synthase -
  AB2S62_RS01340 (AB2S62_01100) - 274687..276204 (+) 1518 WP_367987943.1 SPOR domain-containing protein -
  AB2S62_RS01345 (AB2S62_01105) - 276274..277098 (+) 825 WP_367987944.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 556 a.a.        Molecular weight: 60430.92 Da        Isoelectric Point: 4.4854

>NTDB_id=1024027 AB2S62_RS01325 WP_374144809.1 271097..272767(+) (pilQ) [Vibrio sp. NTOU-M3]
MLMSAVSVAAEDNPSNTLKNIDFRVDGKQNSKIIIELESPRLAVDLQKAQEGLSIELLNTHVPDDKLYLLDVKDFATHVE
SIEVFRKEPSALLVASIKGDYTYNYTLNGKFLEVVVSKVEADAVPKQKSILEKEGKKISINFQDIPVRNVLQLIADYNDF
NLVVSDSVTGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVVLVAPKAELDLREKKKLEQARMEEELGDLTSEIIKVKF
ASASEIAEMIGGEGTVNMLSERGSISIDERTNSLLIRDLKENIDVIREIVDSLDIPVKQVQIEARIVSVNEGDLDELGVR
WGVMSTNGSNSVAGSIEGNLWQAGLYGGDGESGDGALPIDDFLNVNLAATAANASSIAFQVAKLGSDTLLDLELSALQRE
SKAEVISSPRLITTNKKPAYIEQGTEIPYLESSSSGATSVSFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGDVVKTGT
GEAVAINTQRIGTQVLVNNGETVVLGGIFQHSITDTVDKVPLLGDLPLLGALFRRSYQQMGKSELLIFVTPKVVVQ

Nucleotide


Download         Length: 1671 bp        

>NTDB_id=1024027 AB2S62_RS01325 WP_374144809.1 271097..272767(+) (pilQ) [Vibrio sp. NTOU-M3]
ATGCTGATGTCAGCGGTTAGTGTTGCAGCGGAAGATAACCCTTCCAATACCCTGAAAAATATTGATTTCAGAGTAGATGG
AAAGCAAAACTCAAAAATCATTATTGAGTTAGAAAGTCCTCGTTTAGCGGTTGACTTACAAAAAGCGCAGGAAGGGTTGA
GTATTGAGTTACTGAACACGCATGTTCCGGATGATAAACTCTATTTACTTGATGTAAAGGATTTTGCGACGCATGTTGAG
TCCATCGAAGTATTCCGCAAAGAACCAAGTGCTTTATTGGTGGCCAGTATTAAAGGTGACTACACCTACAATTACACATT
GAATGGTAAGTTCTTAGAAGTTGTCGTTTCTAAAGTTGAAGCCGATGCGGTACCTAAACAAAAGAGCATTTTGGAAAAAG
AAGGGAAAAAAATCTCGATTAACTTCCAAGATATTCCGGTACGAAATGTTTTGCAGCTCATTGCGGACTATAACGACTTT
AACCTTGTGGTTTCAGACTCGGTAACTGGCAATTTGACGTTACGTTTGGATGGTGTGCCATGGCAACAAGTGTTGGATAT
TATTCTGCAGGTCAAAGGGCTAGATAAGCGTGTTGATGGCAACGTGGTGCTGGTTGCGCCTAAAGCTGAGCTTGATTTAC
GTGAGAAAAAGAAACTAGAGCAAGCGCGTATGGAAGAAGAGTTGGGCGATCTCACCTCTGAAATCATCAAAGTGAAATTC
GCGAGTGCCTCTGAAATTGCAGAAATGATTGGCGGGGAAGGCACAGTCAACATGTTGTCTGAACGAGGTTCAATCAGCAT
CGATGAGCGCACTAATTCATTGTTAATCCGAGATTTAAAAGAAAATATTGATGTGATCCGTGAAATTGTGGATTCACTCG
ATATTCCGGTTAAACAGGTGCAGATTGAGGCTCGTATTGTTAGCGTCAATGAAGGTGACTTAGATGAACTTGGCGTTCGC
TGGGGTGTGATGTCTACCAATGGGAGCAATTCGGTAGCGGGCTCCATTGAAGGTAATCTGTGGCAAGCTGGACTTTATGG
TGGCGATGGTGAGTCAGGTGATGGTGCGCTACCCATTGATGATTTCCTTAACGTGAACCTAGCGGCGACGGCGGCCAATG
CGTCTTCTATCGCCTTCCAAGTGGCTAAGCTTGGTTCCGATACCTTATTGGATCTGGAACTCTCCGCGTTGCAACGTGAG
TCGAAAGCGGAAGTGATTTCCAGTCCGCGGCTGATCACAACTAATAAAAAGCCCGCTTACATTGAACAAGGTACCGAAAT
CCCTTACTTAGAATCCTCTTCGAGTGGAGCAACCAGTGTAAGCTTCAAGAAAGCAGTACTTAGTTTGAAAGTAACGCCAC
AAATAACGCCAGATAACCGTTTAGTCCTTGATTTGAGTGTCACTCAGGATAGGCCAGGTGATGTGGTGAAAACCGGTACC
GGTGAAGCGGTTGCCATCAATACTCAGCGGATTGGGACGCAAGTCTTGGTCAACAATGGTGAAACGGTTGTGCTTGGTGG
TATCTTCCAGCACAGCATTACGGATACGGTCGATAAAGTGCCGCTATTGGGCGATCTGCCGCTATTAGGTGCATTATTCC
GTCGTAGTTACCAGCAAATGGGTAAAAGTGAACTCTTGATTTTTGTCACACCGAAGGTGGTTGTGCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(396-554)

Bacterial type II/III secretion system short domain (Secretin_N)

(234-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae strain A1552

78.237

100

0.782
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

78.237

100

0.782
  pilQ Vibrio campbellii strain DS40M4

77.314

99.101

0.766
  pilQ Legionella pneumophila strain ERS1305867

42.441

98.741

0.419
  pilQ Legionella pneumophila strain Lp02

42.441

98.741

0.419
  pilQ Pseudomonas aeruginosa PAK

40.642

100

0.41
  comQ Acinetobacter baylyi ADP1

39.965

100

0.408
  pilQ Acinetobacter baumannii strain A118

37.391

100

0.387
  pilQ Acinetobacter baumannii D1279779

37.391

100

0.387

Multiple sequence alignment