Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | AB2S62_RS01310 | Genome accession | NZ_CP162100 |
| Coordinates | 269330..269920 (+) | Length | 196 a.a. |
| NCBI ID | WP_367987937.1 | Uniprot ID | - |
| Organism | Vibrio sp. NTOU-M3 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 264330..274920
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB2S62_RS01295 (AB2S62_01055) | oxyR | 264765..265655 (+) | 891 | WP_367987934.1 | DNA-binding transcriptional regulator OxyR | - |
| AB2S62_RS01300 (AB2S62_01060) | - | 265695..268202 (-) | 2508 | WP_367987935.1 | penicillin-binding protein 1A | - |
| AB2S62_RS01305 (AB2S62_01065) | pilM | 268345..269340 (+) | 996 | WP_367987936.1 | type IV pilus assembly protein PilM | Machinery gene |
| AB2S62_RS01310 (AB2S62_01070) | pilN | 269330..269920 (+) | 591 | WP_367987937.1 | PilN domain-containing protein | Machinery gene |
| AB2S62_RS01315 (AB2S62_01075) | pilO | 269913..270503 (+) | 591 | WP_367987938.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| AB2S62_RS01320 (AB2S62_01080) | pilP | 270493..271011 (+) | 519 | WP_367987939.1 | pilus assembly protein PilP | Machinery gene |
| AB2S62_RS01325 (AB2S62_01085) | pilQ | 271097..272767 (+) | 1671 | WP_374144809.1 | type IV pilus secretin PilQ | Machinery gene |
| AB2S62_RS01330 (AB2S62_01090) | aroK | 272943..273461 (+) | 519 | WP_367987941.1 | shikimate kinase AroK | - |
| AB2S62_RS01335 (AB2S62_01095) | aroB | 273495..274589 (+) | 1095 | WP_367987942.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 22307.90 Da Isoelectric Point: 10.1383
>NTDB_id=1024024 AB2S62_RS01310 WP_367987937.1 269330..269920(+) (pilN) [Vibrio sp. NTOU-M3]
MLHSINLLPWREELRERHKKRFLSLLILGILVGIGIQWGIGLYISNETEKQQSRLSYLNSYIAELDRRIAALKQVEQDHA
ALLTRLAVVEKLQKQRNKTTDFMNLMPGLIPEGVYVDKIKMGGNEIEIAGISDTTSRLATMLDNLEKSSKLNEVEMHSIV
HGKVRFGKKFQTFKVSFNFMTDELPQTPANGGKRNG
MLHSINLLPWREELRERHKKRFLSLLILGILVGIGIQWGIGLYISNETEKQQSRLSYLNSYIAELDRRIAALKQVEQDHA
ALLTRLAVVEKLQKQRNKTTDFMNLMPGLIPEGVYVDKIKMGGNEIEIAGISDTTSRLATMLDNLEKSSKLNEVEMHSIV
HGKVRFGKKFQTFKVSFNFMTDELPQTPANGGKRNG
Nucleotide
Download Length: 591 bp
>NTDB_id=1024024 AB2S62_RS01310 WP_367987937.1 269330..269920(+) (pilN) [Vibrio sp. NTOU-M3]
ATGCTGCATAGTATTAACTTACTTCCTTGGCGTGAAGAGTTACGTGAGCGTCATAAAAAGCGTTTCTTATCGTTACTTAT
CCTCGGGATCCTCGTGGGGATAGGTATTCAATGGGGAATTGGGTTGTATATCAGCAACGAGACAGAAAAGCAGCAATCTC
GTTTGTCTTATCTCAATAGTTATATTGCTGAACTTGACCGCCGCATTGCTGCACTTAAACAAGTTGAGCAAGATCATGCG
GCATTACTTACTCGGTTAGCGGTGGTCGAGAAGCTACAAAAACAACGCAATAAAACCACGGACTTTATGAACTTGATGCC
AGGCTTGATCCCGGAAGGTGTCTATGTCGATAAGATCAAAATGGGTGGTAATGAAATCGAGATTGCTGGGATCAGTGATA
CCACTTCACGCTTAGCCACGATGCTCGATAACCTTGAGAAATCGAGTAAGTTGAATGAGGTCGAAATGCACTCGATTGTG
CATGGTAAGGTTCGTTTCGGTAAGAAATTTCAAACCTTCAAAGTCTCATTTAATTTCATGACTGATGAGCTGCCGCAAAC
TCCAGCGAATGGAGGTAAACGTAATGGCTAG
ATGCTGCATAGTATTAACTTACTTCCTTGGCGTGAAGAGTTACGTGAGCGTCATAAAAAGCGTTTCTTATCGTTACTTAT
CCTCGGGATCCTCGTGGGGATAGGTATTCAATGGGGAATTGGGTTGTATATCAGCAACGAGACAGAAAAGCAGCAATCTC
GTTTGTCTTATCTCAATAGTTATATTGCTGAACTTGACCGCCGCATTGCTGCACTTAAACAAGTTGAGCAAGATCATGCG
GCATTACTTACTCGGTTAGCGGTGGTCGAGAAGCTACAAAAACAACGCAATAAAACCACGGACTTTATGAACTTGATGCC
AGGCTTGATCCCGGAAGGTGTCTATGTCGATAAGATCAAAATGGGTGGTAATGAAATCGAGATTGCTGGGATCAGTGATA
CCACTTCACGCTTAGCCACGATGCTCGATAACCTTGAGAAATCGAGTAAGTTGAATGAGGTCGAAATGCACTCGATTGTG
CATGGTAAGGTTCGTTTCGGTAAGAAATTTCAAACCTTCAAAGTCTCATTTAATTTCATGACTGATGAGCTGCCGCAAAC
TCCAGCGAATGGAGGTAAACGTAATGGCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
60.714 |
100 |
0.607 |
| pilN | Vibrio cholerae strain A1552 |
60.204 |
100 |
0.602 |