Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | AB3G52_RS09625 | Genome accession | NZ_CP161995 |
| Coordinates | 2014445..2014825 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836909.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain SIMBA035 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2009445..2019825
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB3G52_RS09595 (AB3G52_09595) | tadA | 2009564..2010067 (-) | 504 | WP_000033177.1 | tRNA adenosine(34) deaminase TadA | - |
| AB3G52_RS09600 (AB3G52_09600) | - | 2010074..2011198 (-) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| AB3G52_RS09605 (AB3G52_09605) | ung | 2011195..2011908 (-) | 714 | WP_001177527.1 | uracil-DNA glycosylase | - |
| AB3G52_RS09610 (AB3G52_09610) | - | 2011959..2012555 (-) | 597 | WP_000908453.1 | 6-carboxytetrahydropterin synthase | - |
| AB3G52_RS09615 (AB3G52_09615) | gspK | 2012785..2013744 (-) | 960 | WP_001218621.1 | type II secretion system minor pseudopilin GspK | - |
| AB3G52_RS09620 (AB3G52_09620) | xcpW | 2013744..2014445 (-) | 702 | WP_000594588.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| AB3G52_RS09625 (AB3G52_09625) | xcpV | 2014445..2014825 (-) | 381 | WP_000836909.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| AB3G52_RS09630 (AB3G52_09630) | - | 2014815..2015369 (-) | 555 | WP_000841372.1 | type II secretion system protein | - |
| AB3G52_RS09635 (AB3G52_09635) | - | 2015379..2015987 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| AB3G52_RS09640 (AB3G52_09640) | - | 2016025..2016798 (-) | 774 | WP_000497301.1 | TatD family hydrolase | - |
| AB3G52_RS09645 (AB3G52_09645) | - | 2016816..2017157 (-) | 342 | WP_049581987.1 | PilZ domain-containing protein | - |
| AB3G52_RS09650 (AB3G52_09650) | - | 2017169..2018149 (-) | 981 | WP_001075419.1 | DNA polymerase III subunit delta' | - |
| AB3G52_RS09655 (AB3G52_09655) | kdsB | 2018161..2018922 (-) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13991.24 Da Isoelectric Point: 9.8004
>NTDB_id=1023337 AB3G52_RS09625 WP_000836909.1 2014445..2014825(-) (xcpV) [Acinetobacter baumannii strain SIMBA035]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDLDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDLDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=1023337 AB3G52_RS09625 WP_000836909.1 2014445..2014825(-) (xcpV) [Acinetobacter baumannii strain SIMBA035]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGGACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCTGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGGACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCTGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
99.206 |
100 |
0.992 |