Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB1504_RS11125 Genome accession   NZ_CP161857
Coordinates   2251033..2251452 (-) Length   139 a.a.
NCBI ID   WP_002347570.1    Uniprot ID   -
Organism   Enterococcus faecium strain C1151     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2246033..2256452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1504_RS11085 - 2246161..2246979 (-) 819 WP_407973428.1 radical SAM protein -
  AB1504_RS11090 - 2246946..2247188 (-) 243 WP_002347685.1 radical SAM protein -
  AB1504_RS11095 - 2247181..2247483 (-) 303 WP_002347577.1 ABC transporter ATP-binding protein -
  AB1504_RS11100 - 2247510..2248472 (-) 963 WP_002347576.1 ABC transporter ATP-binding protein -
  AB1504_RS11105 - 2248815..2249303 (-) 489 WP_002347574.1 thioredoxin family protein -
  AB1504_RS11110 - 2249707..2249889 (-) 183 WP_050558114.1 hypothetical protein -
  AB1504_RS11115 - 2250194..2250625 (-) 432 WP_002347572.1 DNA/RNA non-specific endonuclease -
  AB1504_RS11120 - 2250661..2250936 (-) 276 WP_002347571.1 hypothetical protein -
  AB1504_RS11125 ssb 2251033..2251452 (-) 420 WP_002347570.1 single-stranded DNA-binding protein Machinery gene
  AB1504_RS11130 - 2251486..2251791 (-) 306 WP_002347569.1 hypothetical protein -
  AB1504_RS11135 - 2251838..2252179 (-) 342 WP_002347568.1 hypothetical protein -
  AB1504_RS11140 - 2252251..2252517 (-) 267 WP_002347567.1 hypothetical protein -
  AB1504_RS11145 - 2253014..2253925 (-) 912 WP_002347566.1 replication-relaxation family protein -
  AB1504_RS11150 - 2254736..2255158 (-) 423 WP_002347565.1 thioredoxin family protein -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 15707.64 Da        Isoelectric Point: 6.3629

>NTDB_id=1022821 AB1504_RS11125 WP_002347570.1 2251033..2251452(-) (ssb) [Enterococcus faecium strain C1151]
MMNSVNLVGRLTKEVDLKYTPKGNATGTFILAVNRNYTNANGEREADYIRCVIWRKAAETLAKFTGKGSLIGINGRLQTR
SYQNQQGQTMYVTEVLVTDFYLLESKEVNEQRAKAITNNQVEQSTFENDVQISDSDLPF

Nucleotide


Download         Length: 420 bp        

>NTDB_id=1022821 AB1504_RS11125 WP_002347570.1 2251033..2251452(-) (ssb) [Enterococcus faecium strain C1151]
ATGATGAATTCAGTAAATTTAGTAGGACGATTAACAAAAGAAGTGGATTTAAAATATACGCCAAAAGGGAATGCCACAGG
AACCTTTATTTTAGCTGTTAATCGAAATTATACGAATGCAAATGGTGAGCGTGAAGCAGATTATATTCGCTGTGTAATTT
GGAGAAAAGCAGCGGAAACTTTAGCAAAGTTTACTGGAAAAGGAAGTTTGATTGGCATTAATGGACGTCTTCAAACAAGG
AGCTATCAGAATCAGCAAGGACAGACAATGTATGTTACAGAAGTTCTAGTGACAGATTTCTATTTGTTAGAGAGTAAAGA
AGTCAATGAGCAACGAGCAAAAGCGATAACGAATAATCAAGTAGAGCAATCAACGTTTGAAAATGACGTTCAAATTTCAG
ATAGTGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.619
  ssbA Bacillus subtilis subsp. subtilis str. 168

44.186

100

0.547
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.165

100

0.432
  ssbB/cilA Streptococcus pneumoniae D39

42.446

100

0.424
  ssbB/cilA Streptococcus pneumoniae Rx1

42.446

100

0.424
  ssbB/cilA Streptococcus pneumoniae R6

42.446

100

0.424
  ssbB/cilA Streptococcus mitis NCTC 12261

42.446

100

0.424
  ssbB/cilA Streptococcus mitis SK321

42.446

100

0.424
  ssbB Bacillus subtilis subsp. subtilis str. 168

53.774

76.259

0.41
  ssbB Streptococcus sobrinus strain NIDR 6715-7

40.288

100

0.403
  ssbA Streptococcus mutans UA159

39.568

100

0.396

Multiple sequence alignment