Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   DQM67_RS07075 Genome accession   NZ_LS483383
Coordinates   1412598..1412822 (-) Length   74 a.a.
NCBI ID   WP_005589514.1    Uniprot ID   -
Organism   Streptococcus cristatus ATCC 51100 strain NCTC 12479     
Function   activate transcription of comX; activate transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1407598..1417822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM67_RS07050 (NCTC12479_01367) - 1408862..1409293 (-) 432 WP_005589521.1 arginine repressor -
  DQM67_RS07055 (NCTC12479_01368) - 1409277..1410101 (-) 825 WP_005589519.1 TlyA family RNA methyltransferase -
  DQM67_RS07060 (NCTC12479_01369) - 1410094..1410969 (-) 876 WP_005589517.1 polyprenyl synthetase family protein -
  DQM67_RS07065 (NCTC12479_01370) - 1410966..1411178 (-) 213 WP_005589516.1 exodeoxyribonuclease VII small subunit -
  DQM67_RS07070 (NCTC12479_01371) xseA 1411156..1412496 (-) 1341 WP_005589515.1 exodeoxyribonuclease VII large subunit -
  DQM67_RS07075 (NCTC12479_01372) comR 1412598..1412822 (-) 225 WP_005589514.1 helix-turn-helix domain-containing protein Regulator
  DQM67_RS07080 (NCTC12479_01373) - 1413044..1413886 (-) 843 WP_005589513.1 NAD(P)H-hydrate dehydratase -
  DQM67_RS07085 (NCTC12479_01374) - 1414588..1415298 (-) 711 WP_005589511.1 ABC transporter ATP-binding protein -
  DQM67_RS07090 (NCTC12479_01375) - 1415298..1416062 (-) 765 WP_005589509.1 ABC transporter ATP-binding protein -
  DQM67_RS07095 (NCTC12479_01376) - 1416062..1417015 (-) 954 WP_005589507.1 branched-chain amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 74 a.a.        Molecular weight: 8677.20 Da        Isoelectric Point: 9.1156

>NTDB_id=1021815 DQM67_RS07075 WP_005589514.1 1412598..1412822(-) (comR) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
MSELKVAIGKKIRELREQRKMTRELLCEDETRLTVRQLARIEAGDSIPSLLTLEFIAQQLRIEMYQIIKESTKS

Nucleotide


Download         Length: 225 bp        

>NTDB_id=1021815 DQM67_RS07075 WP_005589514.1 1412598..1412822(-) (comR) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
ATGTCAGAGCTAAAAGTAGCAATTGGGAAAAAAATTCGAGAACTGCGGGAACAACGTAAAATGACAAGGGAATTGCTGTG
TGAGGATGAGACTCGTTTGACAGTCAGACAGCTTGCTCGTATTGAGGCAGGCGATTCGATTCCTAGTTTGCTAACCTTAG
AATTCATTGCGCAACAGTTGCGCATTGAAATGTATCAAATTATCAAGGAAAGTACAAAATCTTAG

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(12-64)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus thermophilus LMD-9

46.377

93.243

0.432
  comR Streptococcus thermophilus LMG 18311

44.928

93.243

0.419
  comR Streptococcus salivarius strain HSISS4

44.286

94.595

0.419
  comR Streptococcus salivarius SK126

51.724

78.378

0.405
  comR Streptococcus pyogenes MGAS8232

52.727

74.324

0.392
  comR Streptococcus pyogenes MGAS315

52.727

74.324

0.392
  comR/comR2 Streptococcus sobrinus strain NIDR 6715-7

47.458

79.73

0.378
  comR/comR1 Streptococcus sobrinus strain NIDR 6715-7

45.902

82.432

0.378
  comR Streptococcus suis 05ZYH33

44.444

85.135

0.378
  comR Streptococcus suis P1/7

44.444

85.135

0.378
  comR Streptococcus suis D9

44.444

85.135

0.378