Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABZP31_RS01210 Genome accession   NZ_CP160437
Coordinates   260512..261738 (-) Length   408 a.a.
NCBI ID   WP_248134770.1    Uniprot ID   -
Organism   Acinetobacter sp. FL     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 255512..266738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZP31_RS01180 (ABZP31_01180) - 256695..256832 (+) 138 WP_005405738.1 hypothetical protein -
  ABZP31_RS01185 (ABZP31_01185) - 256900..257223 (+) 324 WP_005016998.1 pyrimidine/purine nucleoside phosphorylase -
  ABZP31_RS01190 (ABZP31_01190) rlmB 257327..258082 (+) 756 WP_005405959.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ABZP31_RS01195 (ABZP31_01195) - 258107..259042 (+) 936 WP_101235097.1 DMT family transporter -
  ABZP31_RS01200 (ABZP31_01200) coaE 259039..259650 (-) 612 WP_005016991.1 dephospho-CoA kinase -
  ABZP31_RS01205 (ABZP31_01205) pilD 259652..260512 (-) 861 WP_248134768.1 A24 family peptidase Machinery gene
  ABZP31_RS01210 (ABZP31_01210) pilC 260512..261738 (-) 1227 WP_248134770.1 type II secretion system F family protein Machinery gene
  ABZP31_RS01215 (ABZP31_01215) pilB 261768..263477 (-) 1710 WP_034672272.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABZP31_RS01220 (ABZP31_01220) tpiA 263766..264560 (+) 795 WP_034672273.1 triose-phosphate isomerase -
  ABZP31_RS01225 (ABZP31_01225) secG 264571..264900 (+) 330 WP_017400668.1 preprotein translocase subunit SecG -
  ABZP31_RS01245 (ABZP31_01245) rimP 265527..266051 (+) 525 WP_005016981.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45047.55 Da        Isoelectric Point: 9.9504

>NTDB_id=1021115 ABZP31_RS01210 WP_248134770.1 260512..261738(-) (pilC) [Acinetobacter sp. FL]
MAVKKAQMMPTFAYDGVDRKGIKVKGELTAKNMALAKVTLRKQGITIKTIREKRRNILEGLMKKRVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKAEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSNWMQKYWFILIIAIAVLIF
GFLEAKKRSQKFRDALDRMALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEQAVMKIREDVA
TGQQLQFAMRASNRFPPMAVQMVAIGEESGALDAMLDKVATHFENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1021115 ABZP31_RS01210 WP_248134770.1 260512..261738(-) (pilC) [Acinetobacter sp. FL]
ATGGCAGTCAAAAAAGCACAAATGATGCCGACTTTTGCTTATGACGGCGTCGACCGTAAAGGAATTAAAGTTAAAGGGGA
GCTGACAGCCAAGAATATGGCGTTGGCTAAGGTGACTTTGCGCAAGCAAGGAATAACTATCAAAACCATTCGGGAAAAAC
GTCGCAATATTCTAGAAGGCTTGATGAAGAAAAGGGTTTCTACACTAGATATCACTATCTTTACACGTCAGTTGGCCACT
ATGATGAAAGCGGGTGTTCCCCTTGTACAAGGCTTTGAAATTGTCGCTGAAGGTCTCGAAAATCCGGCTATGCGTGAAGT
GGTTTTGGGTATTAAGGCTGAAGTTGAAGGGGGCAATACATTTGCCGGTGCACTGCGTAAATATCCCCAATATTTTGATA
ACCTGTTCTGCTCACTGGTCGAATCTGGTGAACAGTCTGGTGCACTTGAGACCATGCTCGACCGGGTGGCCATCTATAAA
GAAAAGAGTGAACTTCTCAAGCAGAAAATTAAAAAGGCGATGAAATATCCCGCCACAGTTATTGTGGTTGCGGTGATTGT
AACGATTATTCTGATGGTTAAGGTAGTTCCGGTATTCCAGGACCTGTTTAGCTCATTTGGTGCAGATCTGCCTGCATTTA
CCCAGATGGTTGTCAATATGTCGAACTGGATGCAGAAGTACTGGTTTATTCTCATTATCGCAATTGCTGTTCTTATTTTC
GGTTTTCTTGAAGCCAAAAAGCGGAGCCAGAAGTTCCGTGATGCGCTTGACAGAATGGCTCTTAAACTGCCAATTTTTGG
TGATCTGGTCTATAAAGCAATTATTGCCCGTTATAGCCGTACGCTGGCAACCACATTTGCAGCCGGCGTACCACTTATTG
ATGCGCTGGAATCTACTGCAGGTGCAACTAATAATGTAATTTATGAGCAGGCTGTCATGAAAATCCGGGAAGATGTAGCA
ACCGGTCAGCAGCTTCAGTTTGCTATGCGTGCCTCTAACCGTTTTCCGCCTATGGCAGTACAGATGGTTGCCATTGGAGA
AGAATCGGGCGCCCTTGATGCCATGTTAGATAAAGTCGCGACACATTTTGAAAATGAAGTTGACAATGCCGTTGACGGTC
TGACTTCCATGATGGAACCCCTGATTATGGCAATTCTGGGTGTATTAGTGGGTGGCCTTGTGATCGCCATGTATCTGCCA
ATTTTCCAGATGGGTTCAGTTGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

90.686

100

0.907
  pilC Acinetobacter baylyi ADP1

85.049

100

0.85
  pilC Pseudomonas stutzeri DSM 10701

59.259

99.265

0.588
  pilC Legionella pneumophila strain ERS1305867

52.593

99.265

0.522
  pilG Neisseria gonorrhoeae MS11

46.366

97.794

0.453
  pilG Neisseria meningitidis 44/76-A

46.115

97.794

0.451
  pilC Vibrio cholerae strain A1552

43.873

100

0.439
  pilC Vibrio campbellii strain DS40M4

42.327

99.02

0.419
  pilC Thermus thermophilus HB27

37.157

98.284

0.365

Multiple sequence alignment