Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ABZP31_RS01205 Genome accession   NZ_CP160437
Coordinates   259652..260512 (-) Length   286 a.a.
NCBI ID   WP_248134768.1    Uniprot ID   -
Organism   Acinetobacter sp. FL     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 254652..265512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZP31_RS01180 (ABZP31_01180) - 256695..256832 (+) 138 WP_005405738.1 hypothetical protein -
  ABZP31_RS01185 (ABZP31_01185) - 256900..257223 (+) 324 WP_005016998.1 pyrimidine/purine nucleoside phosphorylase -
  ABZP31_RS01190 (ABZP31_01190) rlmB 257327..258082 (+) 756 WP_005405959.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ABZP31_RS01195 (ABZP31_01195) - 258107..259042 (+) 936 WP_101235097.1 DMT family transporter -
  ABZP31_RS01200 (ABZP31_01200) coaE 259039..259650 (-) 612 WP_005016991.1 dephospho-CoA kinase -
  ABZP31_RS01205 (ABZP31_01205) pilD 259652..260512 (-) 861 WP_248134768.1 A24 family peptidase Machinery gene
  ABZP31_RS01210 (ABZP31_01210) pilC 260512..261738 (-) 1227 WP_248134770.1 type II secretion system F family protein Machinery gene
  ABZP31_RS01215 (ABZP31_01215) pilB 261768..263477 (-) 1710 WP_034672272.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABZP31_RS01220 (ABZP31_01220) tpiA 263766..264560 (+) 795 WP_034672273.1 triose-phosphate isomerase -
  ABZP31_RS01225 (ABZP31_01225) secG 264571..264900 (+) 330 WP_017400668.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32014.37 Da        Isoelectric Point: 7.8064

>NTDB_id=1021114 ABZP31_RS01205 WP_248134768.1 259652..260512(-) (pilD) [Acinetobacter sp. FL]
MQELITLLSNNPTALYIVVGLFSLCIGSFLNVVILRTPKMMEQEWRNECQLLLHPDQPLIDETKLTLSYPASTCPNCHTP
IRWYQNLPLVSWLLLRGKCGQCQNPISIRYPLVELLTALCSLIVVAVYGPTLQMLFGLLLTWALITLTFIDFDTQLLPDR
YTLPLAALGLALNSYALYTSASSAIWGYVIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
VGAIIGIVLLKIRKENQPFAFGPYIAIAGWIAFLWGEQIMKIYLRG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=1021114 ABZP31_RS01205 WP_248134768.1 259652..260512(-) (pilD) [Acinetobacter sp. FL]
ATGCAAGAATTAATTACCTTATTAAGTAATAACCCGACTGCGCTCTACATTGTGGTTGGGCTTTTCAGTCTATGTATTGG
CAGTTTTTTAAATGTCGTTATTCTTCGCACTCCTAAAATGATGGAGCAGGAATGGCGCAATGAATGTCAGTTGTTGCTTC
ATCCAGATCAGCCCCTAATTGATGAAACAAAACTCACGCTCAGCTATCCGGCTTCTACCTGTCCCAACTGTCATACGCCG
ATTCGCTGGTATCAGAATCTGCCTTTAGTCAGCTGGCTGCTACTCAGAGGCAAATGTGGTCAATGCCAGAATCCGATCAG
TATCCGTTACCCTCTAGTTGAACTTTTAACTGCTCTGTGTTCACTTATTGTAGTAGCTGTCTATGGCCCTACCCTGCAAA
TGCTATTTGGTCTGTTACTGACTTGGGCATTAATTACCCTGACCTTCATCGATTTTGATACACAACTGCTTCCAGACCGG
TATACCCTGCCGCTTGCCGCCCTAGGCCTAGCTCTGAACAGTTATGCATTATATACCTCGGCAAGCTCTGCTATTTGGGG
TTATGTGATTGGGTTTTTATGCTTATGGATTGTATATTACCTGTTTAAAGTCATCACCGGCAAAGAAGGCATGGGATACG
GGGACTTTAAGTTACTGGCCGCACTCGGAGCCTGGATGGGTCCTTTAATGCTGCCTTTAATTGTGCTACTTTCATCTTTA
GTCGGGGCAATTATTGGTATCGTACTGCTCAAGATTCGCAAGGAAAACCAGCCTTTTGCCTTTGGTCCCTATATTGCGAT
TGCCGGCTGGATCGCTTTTTTATGGGGTGAGCAAATTATGAAAATTTATCTGAGAGGCTGA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

79.371

100

0.794
  pilD Acinetobacter baumannii D1279779

78.322

100

0.783
  pilD Vibrio cholerae strain A1552

53.875

94.755

0.51
  pilD Vibrio campbellii strain DS40M4

51.087

96.503

0.493
  pilD Neisseria gonorrhoeae MS11

47.312

97.552

0.462

Multiple sequence alignment