Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ABZ559_RS11635 Genome accession   NZ_CP160400
Coordinates   2340261..2340656 (-) Length   131 a.a.
NCBI ID   WP_367006514.1    Uniprot ID   -
Organism   Streptococcus sp. ZY19097     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2335261..2345656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZ559_RS11610 (ABZ559_11610) - 2335694..2336374 (-) 681 WP_018376828.1 response regulator transcription factor -
  ABZ559_RS11615 (ABZ559_11615) - 2336371..2337690 (-) 1320 WP_367006507.1 sensor histidine kinase -
  ABZ559_RS11620 (ABZ559_11620) - 2337687..2338652 (-) 966 WP_367006509.1 sugar ABC transporter substrate-binding protein -
  ABZ559_RS11625 (ABZ559_11625) - 2338662..2339456 (-) 795 WP_367006511.1 Cof-type HAD-IIB family hydrolase -
  ABZ559_RS11630 (ABZ559_11630) - 2339565..2340122 (-) 558 WP_367006513.1 GNAT family N-acetyltransferase -
  ABZ559_RS11635 (ABZ559_11635) ssbA 2340261..2340656 (-) 396 WP_367006514.1 single-stranded DNA-binding protein Machinery gene
  ABZ559_RS11640 (ABZ559_11640) - 2340735..2341454 (+) 720 WP_367006515.1 class I SAM-dependent methyltransferase -
  ABZ559_RS11645 (ABZ559_11645) - 2341666..2343165 (-) 1500 WP_367006517.1 PASTA domain-containing protein -
  ABZ559_RS11650 (ABZ559_11650) - 2343158..2343832 (-) 675 WP_317334235.1 ABC transporter ATP-binding protein -
  ABZ559_RS11655 (ABZ559_11655) - 2343858..2345321 (-) 1464 WP_018376819.1 ABC transporter permease -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14872.92 Da        Isoelectric Point: 8.4413

>NTDB_id=1020953 ABZ559_RS11635 WP_367006514.1 2340261..2340656(-) (ssbA) [Streptococcus sp. ZY19097]
MYNKVIIIKRLTATPEMVKTPNDKSVTRVTVAVNRRFKSQNGEREADFVNVVVWGRLAETLASYGSKGSLISLDGELRTR
KYEKDGKTHYITEVLAHSFQLLESRAQRAMRENNTAGDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1020953 ABZ559_RS11635 WP_367006514.1 2340261..2340656(-) (ssbA) [Streptococcus sp. ZY19097]
ATGTACAATAAAGTGATTATCATCAAACGTCTCACAGCTACACCAGAGATGGTCAAGACACCAAACGACAAATCAGTCAC
GCGCGTGACAGTGGCAGTCAATCGCAGATTTAAGAGTCAAAATGGCGAGCGAGAAGCAGACTTCGTCAATGTAGTCGTCT
GGGGGCGTCTGGCAGAAACACTAGCCTCTTATGGCAGCAAAGGTAGTCTTATTTCTTTAGATGGCGAATTGCGTACTCGC
AAATATGAAAAAGATGGCAAAACGCACTATATCACTGAAGTTTTAGCACATTCTTTCCAACTTTTGGAAAGCCGTGCTCA
ACGTGCTATGCGTGAAAATAATACAGCAGGTGACTTAGCAGATTTGGTTTTAGAGGAGGAAGAGTTGCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

87.023

100

0.87
  ssbB Streptococcus sobrinus strain NIDR 6715-7

78.626

100

0.786
  ssbB/cilA Streptococcus pneumoniae TIGR4

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae Rx1

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae D39

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae R6

77.863

100

0.779
  ssbB/cilA Streptococcus mitis SK321

77.099

100

0.771
  ssbB/cilA Streptococcus mitis NCTC 12261

76.336

100

0.763
  ssbB Lactococcus lactis subsp. cremoris KW2

59.821

85.496

0.511
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405
  ssb Latilactobacillus sakei subsp. sakei 23K

42.735

89.313

0.382

Multiple sequence alignment