Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABV589_RS10380 Genome accession   NZ_CP160398
Coordinates   2321855..2323072 (+) Length   405 a.a.
NCBI ID   WP_096795218.1    Uniprot ID   -
Organism   Pseudomonas sp. HOU2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2316855..2328072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABV589_RS10360 (ABV589_10360) - 2318276..2318572 (+) 297 WP_367086189.1 DUF2845 domain-containing protein -
  ABV589_RS10365 (ABV589_10365) - 2318835..2319191 (-) 357 WP_367085752.1 BON domain-containing protein -
  ABV589_RS10370 (ABV589_10370) pilA 2319488..2319925 (-) 438 WP_367085753.1 pilin Machinery gene
  ABV589_RS10375 (ABV589_10375) pilB 2320152..2321852 (+) 1701 WP_367085754.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABV589_RS10380 (ABV589_10380) pilC 2321855..2323072 (+) 1218 WP_096795218.1 type II secretion system F family protein Machinery gene
  ABV589_RS10385 (ABV589_10385) pilD 2323074..2323946 (+) 873 WP_367085755.1 A24 family peptidase Machinery gene
  ABV589_RS10390 (ABV589_10390) coaE 2323943..2324566 (+) 624 WP_086792846.1 dephospho-CoA kinase -
  ABV589_RS10395 (ABV589_10395) yacG 2324563..2324760 (+) 198 WP_003228296.1 DNA gyrase inhibitor YacG -
  ABV589_RS10400 (ABV589_10400) - 2324767..2324982 (-) 216 WP_064382081.1 hypothetical protein -
  ABV589_RS10405 (ABV589_10405) - 2325048..2325737 (-) 690 WP_367085756.1 energy-coupling factor ABC transporter permease -
  ABV589_RS10410 (ABV589_10410) - 2325935..2326561 (+) 627 WP_003228301.1 DUF1780 domain-containing protein -
  ABV589_RS10415 (ABV589_10415) - 2326558..2327085 (+) 528 WP_367085757.1 MOSC domain-containing protein -
  ABV589_RS10420 (ABV589_10420) - 2327137..2327310 (+) 174 WP_003228304.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43970.75 Da        Isoelectric Point: 10.0979

>NTDB_id=1020856 ABV589_RS10380 WP_096795218.1 2321855..2323072(+) (pilC) [Pseudomonas sp. HOU2]
MAVKAAKISIYAWEGTDRKGSKVTGELSGQNPALIKAQLRKQGINPGKVRKKSTSLLSLGKRIKAQDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPAMRKLVDEVKQEVAAGNSFAAALRKKPQYFDELYCNLVDAGEQSGALDTLLERVATYKEKS
EALKAKIKKALTYPSAVVLVAMVVTGILLVKVVPQFQSVFSGFGAELPAFTLMVISISEFMQQWWWAVLGALIAAVFGIR
HALKKSQALRDRKDTWLLKLPLVGTLMYKSAVARFARTLSTTFAAGVPLVEALDSVAGATGNVVFKRAVLRIRQDVATGM
QLNFSMRSTGVFPNMAVQMTAIGEESGALDDMLDKVAGFYEEEVDNMVDNLTSLMEPFVMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1020856 ABV589_RS10380 WP_096795218.1 2321855..2323072(+) (pilC) [Pseudomonas sp. HOU2]
ATGGCGGTCAAGGCAGCGAAAATCAGTATCTACGCCTGGGAAGGCACGGATCGCAAAGGCAGCAAGGTCACGGGCGAGCT
GAGCGGGCAGAACCCCGCGCTGATCAAGGCCCAACTGCGCAAGCAAGGAATCAATCCAGGCAAGGTACGGAAGAAATCCA
CCTCCCTGCTCAGCCTCGGCAAACGCATCAAGGCCCAAGACATCGCCCTGTTCACCCGGCAGATGGCAACCATGATGAAA
GCCGGCGTACCGCTGCTGCAGTCGTTCGACATCATTGGCGAAGGCTTCGACAACCCGGCGATGCGCAAACTGGTAGACGA
GGTGAAGCAGGAAGTGGCCGCCGGAAACAGCTTCGCCGCCGCACTGCGCAAGAAACCGCAGTATTTCGATGAGCTGTATT
GCAACCTGGTGGATGCTGGCGAGCAATCCGGCGCCCTCGATACGTTGCTCGAACGGGTCGCGACCTATAAGGAAAAAAGC
GAAGCGCTCAAGGCCAAGATCAAGAAAGCCCTGACCTATCCCAGCGCGGTGGTGCTGGTGGCAATGGTCGTCACCGGGAT
TCTGCTGGTAAAAGTGGTGCCGCAGTTTCAGTCGGTATTTTCCGGTTTCGGTGCTGAACTGCCGGCCTTTACCCTGATGG
TAATCAGTATCTCGGAGTTCATGCAGCAATGGTGGTGGGCGGTGCTTGGAGCACTGATTGCAGCGGTGTTCGGCATCCGT
CATGCGCTGAAGAAATCCCAGGCCCTGCGCGACCGCAAAGACACCTGGCTGCTGAAACTGCCGCTGGTGGGGACGCTGAT
GTACAAGTCGGCGGTGGCGCGATTCGCTCGCACCCTGTCGACCACTTTTGCCGCTGGCGTACCGCTGGTGGAGGCACTGG
ACTCAGTGGCAGGTGCCACCGGCAACGTGGTGTTCAAACGCGCGGTGCTGCGTATCCGCCAGGACGTCGCCACCGGCATG
CAGCTGAATTTCTCGATGCGCAGCACCGGCGTCTTCCCCAACATGGCGGTGCAGATGACCGCCATCGGTGAGGAGTCGGG
TGCGCTGGACGACATGCTCGACAAGGTCGCCGGTTTTTATGAAGAGGAAGTGGATAACATGGTCGACAACCTCACCAGCC
TGATGGAGCCGTTCGTCATGGTGGTGCTCGGGGTCATCGTCGGCGGGCTGGTCGTGGCCATGTACCTGCCGATCTTCCAA
CTCGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

73.827

100

0.738
  pilC Acinetobacter baumannii D1279779

58.578

100

0.59
  pilC Acinetobacter baylyi ADP1

58.088

100

0.585
  pilC Legionella pneumophila strain ERS1305867

54.293

97.778

0.531
  pilC Vibrio cholerae strain A1552

44.949

97.778

0.44
  pilG Neisseria gonorrhoeae MS11

43.781

99.259

0.435
  pilG Neisseria meningitidis 44/76-A

43.284

99.259

0.43
  pilC Vibrio campbellii strain DS40M4

41.133

100

0.412
  pilC Thermus thermophilus HB27

38.155

99.012

0.378

Multiple sequence alignment