Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ABV589_RS10385 Genome accession   NZ_CP160398
Coordinates   2323074..2323946 (+) Length   290 a.a.
NCBI ID   WP_367085755.1    Uniprot ID   -
Organism   Pseudomonas sp. HOU2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2318074..2328946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABV589_RS10360 (ABV589_10360) - 2318276..2318572 (+) 297 WP_367086189.1 DUF2845 domain-containing protein -
  ABV589_RS10365 (ABV589_10365) - 2318835..2319191 (-) 357 WP_367085752.1 BON domain-containing protein -
  ABV589_RS10370 (ABV589_10370) pilA 2319488..2319925 (-) 438 WP_367085753.1 pilin Machinery gene
  ABV589_RS10375 (ABV589_10375) pilB 2320152..2321852 (+) 1701 WP_367085754.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABV589_RS10380 (ABV589_10380) pilC 2321855..2323072 (+) 1218 WP_096795218.1 type II secretion system F family protein Machinery gene
  ABV589_RS10385 (ABV589_10385) pilD 2323074..2323946 (+) 873 WP_367085755.1 A24 family peptidase Machinery gene
  ABV589_RS10390 (ABV589_10390) coaE 2323943..2324566 (+) 624 WP_086792846.1 dephospho-CoA kinase -
  ABV589_RS10395 (ABV589_10395) yacG 2324563..2324760 (+) 198 WP_003228296.1 DNA gyrase inhibitor YacG -
  ABV589_RS10400 (ABV589_10400) - 2324767..2324982 (-) 216 WP_064382081.1 hypothetical protein -
  ABV589_RS10405 (ABV589_10405) - 2325048..2325737 (-) 690 WP_367085756.1 energy-coupling factor ABC transporter permease -
  ABV589_RS10410 (ABV589_10410) - 2325935..2326561 (+) 627 WP_003228301.1 DUF1780 domain-containing protein -
  ABV589_RS10415 (ABV589_10415) - 2326558..2327085 (+) 528 WP_367085757.1 MOSC domain-containing protein -
  ABV589_RS10420 (ABV589_10420) - 2327137..2327310 (+) 174 WP_003228304.1 DUF3094 family protein -
  ABV589_RS10425 (ABV589_10425) - 2327374..2328672 (+) 1299 WP_367085758.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 32182.54 Da        Isoelectric Point: 8.3465

>NTDB_id=1020857 ABV589_RS10385 WP_367085755.1 2323074..2323946(+) (pilD) [Pseudomonas sp. HOU2]
MPIDQLFSLYPLAFVLTALLLGLVVGSFLNVLVWRLPKMLERDWRQQAQDVLGLPSETPLPTYNLMLPHSECPRCGHRIR
AWENIPLLSYLLLRGRCSACAAPISKRYPLTELACGLLSAFVAWHMGFGWPAGLLIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFGLFVSLHAALWGAVAGYMALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AIVGVILLRLREQKTSTPMPFGPYLAIAGWIALLWGGQITDFYWQFVGLK

Nucleotide


Download         Length: 873 bp        

>NTDB_id=1020857 ABV589_RS10385 WP_367085755.1 2323074..2323946(+) (pilD) [Pseudomonas sp. HOU2]
ATGCCTATCGACCAACTTTTCAGTCTGTATCCGCTGGCCTTCGTACTCACCGCCCTGCTGCTGGGTCTGGTGGTCGGCAG
TTTTCTCAACGTGCTGGTCTGGCGTCTGCCGAAAATGCTCGAGCGCGACTGGCGCCAGCAGGCCCAAGACGTCCTCGGCC
TGCCGAGCGAAACCCCACTGCCGACCTACAACCTGATGCTGCCGCACTCCGAATGCCCGCGCTGCGGTCACCGGATTCGG
GCGTGGGAAAACATTCCGCTGCTCAGTTATCTGTTGCTGCGCGGACGCTGTTCGGCGTGTGCCGCACCGATCAGCAAACG
TTATCCCCTGACCGAACTGGCCTGCGGCCTGCTCTCGGCATTTGTCGCGTGGCATATGGGTTTCGGCTGGCCGGCCGGTC
TGTTGATCGTCCTCACCTGGGGGCTGCTGGCGATGAGCCTGATCGACACCGAACATCAGCTGCTGCCCGATGTGCTGGTG
TTGCCGTTGTTGTGGCTGGGGCTGATCGTCAACAGCTTCGGGCTGTTTGTCTCGCTGCACGCGGCGCTGTGGGGCGCGGT
GGCCGGCTACATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGCTGACCGGCAAGGACGGCATCGGCCACGGCGATT
TCAAGCTGCTGGCACTGCTCGGCGCCTGGGGTGGCTGGCAGATTCTGCCGCTGACGATTCTGCTGTCGTCGCTGGTGGGG
GCGATTGTCGGGGTGATTCTGTTGCGTCTGCGTGAGCAGAAAACCTCGACGCCGATGCCCTTCGGGCCGTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-126)

Type IV leader peptidase family (Peptidase_A24)

(136-245)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

53.191

97.241

0.517
  pilD Vibrio campbellii strain DS40M4

52.128

97.241

0.507
  pilD Acinetobacter baumannii D1279779

49.638

95.172

0.472
  pilD Acinetobacter nosocomialis M2

49.638

95.172

0.472
  pilD Neisseria gonorrhoeae MS11

49.259

93.103

0.459

Multiple sequence alignment