Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABZM26_RS22995 Genome accession   NZ_CP160044
Coordinates   5101871..5103088 (+) Length   405 a.a.
NCBI ID   WP_366300579.1    Uniprot ID   -
Organism   Pseudomonas atacamensis strain GZ-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5096871..5108088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZM26_RS22975 - 5098316..5098615 (+) 300 WP_071173628.1 DUF2845 domain-containing protein -
  ABZM26_RS22980 - 5098851..5099204 (-) 354 WP_016773155.1 BON domain-containing protein -
  ABZM26_RS22985 - 5099504..5099941 (-) 438 WP_122698547.1 pilin -
  ABZM26_RS22990 pilB 5100168..5101868 (+) 1701 WP_056790439.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABZM26_RS22995 pilC 5101871..5103088 (+) 1218 WP_366300579.1 type II secretion system F family protein Machinery gene
  ABZM26_RS23000 pilD 5103090..5103962 (+) 873 WP_123443320.1 A24 family peptidase Machinery gene
  ABZM26_RS23005 coaE 5103959..5104582 (+) 624 WP_123443319.1 dephospho-CoA kinase -
  ABZM26_RS23010 yacG 5104579..5104779 (+) 201 WP_366300580.1 DNA gyrase inhibitor YacG -
  ABZM26_RS23015 - 5104787..5105002 (-) 216 WP_056790451.1 hypothetical protein -
  ABZM26_RS23020 - 5105068..5105757 (-) 690 WP_366300581.1 energy-coupling factor ABC transporter permease -
  ABZM26_RS23025 - 5105875..5106501 (+) 627 WP_007909887.1 DUF1780 domain-containing protein -
  ABZM26_RS23030 - 5106498..5107025 (+) 528 WP_016773146.1 MOSC domain-containing protein -
  ABZM26_RS23035 - 5107077..5107250 (+) 174 WP_007909875.1 DUF3094 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43956.65 Da        Isoelectric Point: 9.9704

>NTDB_id=1017289 ABZM26_RS22995 WP_366300579.1 5101871..5103088(+) (pilC) [Pseudomonas atacamensis strain GZ-3]
MAVKAAKISVYAWEGTDRKGSKVSGELSGQNPALIKAQLRKQGINPGKVRKKSASLLSLGKRIKPQDIALFTRQMATMMK
AGVPLLQSFDIIGEGFENPAMCKLVDEVKQEVAAGNSFATALRKKPQYFDELYCNLVDAGEQSGALDTLLERVATYKEKS
EALKAKIKKAMTYPTAVVLVAAVVTGILLVKVVPQFQSVFSGFGAELPGFTLMIISLSEFMQQWWWAILFALVAAFFGTR
HALKTSQALRDRRDAWLLKLPLVGTLMYKSAVARFARTLSTTFAAGVPLVEALDSVAGATGNVVFKRAVLRVRQDVSTGM
QLNFSMRSTGVFPNMAVQMTAIGEESGALDDMLDKVAGFYEAEVDNMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1017289 ABZM26_RS22995 WP_366300579.1 5101871..5103088(+) (pilC) [Pseudomonas atacamensis strain GZ-3]
ATGGCGGTCAAGGCAGCGAAAATCAGCGTTTACGCCTGGGAAGGCACCGACCGCAAAGGCAGTAAAGTCAGCGGCGAGTT
GAGCGGGCAGAACCCCGCACTGATCAAGGCACAGCTGCGCAAACAAGGGATCAACCCGGGCAAGGTGCGCAAGAAATCCG
CTTCCCTGCTGAGCTTGGGCAAACGCATCAAACCGCAGGACATCGCCCTGTTCACCCGGCAGATGGCAACGATGATGAAG
GCCGGTGTACCGCTGTTGCAGTCCTTCGACATCATCGGCGAGGGCTTCGAAAACCCGGCCATGTGCAAACTGGTCGACGA
GGTCAAACAGGAGGTCGCGGCCGGTAACAGCTTCGCCACGGCCCTGCGCAAGAAACCGCAATACTTCGACGAGTTGTACT
GCAACCTGGTCGACGCCGGCGAACAGTCCGGTGCCCTCGACACTTTGCTCGAACGGGTCGCGACCTATAAGGAAAAAAGC
GAAGCGCTCAAGGCCAAGATCAAGAAGGCCATGACCTACCCCACCGCCGTGGTGCTGGTGGCGGCGGTGGTGACCGGCAT
TCTGCTGGTCAAGGTGGTGCCGCAGTTCCAGTCGGTATTCTCCGGGTTCGGCGCCGAACTGCCGGGCTTCACCCTGATGA
TCATCAGCCTGTCGGAATTCATGCAGCAGTGGTGGTGGGCGATTCTGTTTGCACTGGTGGCAGCGTTTTTCGGCACTCGT
CACGCGCTGAAGACCTCGCAGGCCCTGCGCGACCGGCGCGATGCCTGGCTGCTGAAGCTGCCGCTGGTAGGCACCTTGAT
GTACAAGTCCGCCGTCGCCCGCTTTGCCCGCACCCTGTCGACCACTTTCGCCGCCGGGGTGCCATTGGTGGAAGCGCTGG
ATTCGGTCGCCGGCGCCACCGGCAACGTGGTGTTCAAGCGCGCGGTGCTACGGGTGCGGCAGGACGTCTCGACGGGCATG
CAGCTGAATTTTTCGATGCGCAGCACCGGTGTGTTTCCGAACATGGCGGTGCAGATGACCGCCATCGGCGAGGAATCGGG
CGCACTGGATGACATGCTCGACAAGGTCGCCGGTTTTTATGAAGCGGAAGTCGATAACATGGTCGACAACCTCACCAGCC
TGATGGAGCCGTTCATCATGGTGGTGCTGGGGGTCATCGTCGGTGGACTGGTGGTGGCCATGTACCTGCCGATCTTCCAA
CTCGGCTCAGCAATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

74.074

100

0.741
  pilC Acinetobacter baylyi ADP1

58.578

100

0.59
  pilC Acinetobacter baumannii D1279779

58.088

100

0.585
  pilC Legionella pneumophila strain ERS1305867

52.75

98.765

0.521
  pilC Vibrio cholerae strain A1552

44.949

97.778

0.44
  pilG Neisseria gonorrhoeae MS11

43.424

99.506

0.432
  pilG Neisseria meningitidis 44/76-A

42.68

99.506

0.425
  pilC Vibrio campbellii strain DS40M4

41.626

100

0.417
  pilC Thermus thermophilus HB27

39.401

99.012

0.39

Multiple sequence alignment