Detailed information NTG1017290

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABZM26_RS23000
• Genome accession: NZ_CP160044
• Coordinates: 5103090..5103962 (+)
• Length: 290 a.a.
• NCBI ID: WP_123443320.1
• Uniprot ID: -
• Organism: Pseudomonas atacamensis strain GZ-3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5098090..5108962

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABZM26_RS22975	-	5098316..5098615 (+)	300	WP_071173628.1	DUF2845 domain-containing protein	-
ABZM26_RS22980	-	5098851..5099204 (-)	354	WP_016773155.1	BON domain-containing protein	-
ABZM26_RS22985	-	5099504..5099941 (-)	438	WP_122698547.1	pilin	-
ABZM26_RS22990	pilB	5100168..5101868 (+)	1701	WP_056790439.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABZM26_RS22995	pilC	5101871..5103088 (+)	1218	WP_366300579.1	type II secretion system F family protein	Machinery gene
ABZM26_RS23000	pilD	5103090..5103962 (+)	873	WP_123443320.1	A24 family peptidase	Machinery gene
ABZM26_RS23005	coaE	5103959..5104582 (+)	624	WP_123443319.1	dephospho-CoA kinase	-
ABZM26_RS23010	yacG	5104579..5104779 (+)	201	WP_366300580.1	DNA gyrase inhibitor YacG	-
ABZM26_RS23015	-	5104787..5105002 (-)	216	WP_056790451.1	hypothetical protein	-
ABZM26_RS23020	-	5105068..5105757 (-)	690	WP_366300581.1	energy-coupling factor ABC transporter permease	-
ABZM26_RS23025	-	5105875..5106501 (+)	627	WP_007909887.1	DUF1780 domain-containing protein	-
ABZM26_RS23030	-	5106498..5107025 (+)	528	WP_016773146.1	MOSC domain-containing protein	-
ABZM26_RS23035	-	5107077..5107250 (+)	174	WP_007909875.1	DUF3094 domain-containing protein	-
ABZM26_RS23040	-	5107314..5108612 (+)	1299	WP_016773144.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31894.14 Da
• Isoelectric Point: 7.6248

>NTDB_id=1017290 ABZM26_RS23000 WP_123443320.1 5103090..5103962(+) (pilD) [Pseudomonas atacamensis strain GZ-3]
MPIDELFAVYPLAFVVSALLLGLVVGSFLNVVVWRLPKMLERDWRQQAHDVLGLPSETPVPTYNLMLPHSACPYCGHRIR
PWENIPLLSYLCLRGRCSACSAPISKRYPLTELACGLLSAFIAWHLGFGWPASLLILLTWGLLAMSLIDCEHQLLPDVLV
LPLLWLGLIVNSFGVFVALPDALWGAVAGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AILGVVMLRLRAQATSTPIPFGPFLAIAGWIALLWGGQITDFYWQSVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=1017290 ABZM26_RS23000 WP_123443320.1 5103090..5103962(+) (pilD) [Pseudomonas atacamensis strain GZ-3]
ATGCCTATCGACGAACTGTTTGCCGTGTATCCGCTGGCCTTTGTGGTCAGCGCGCTGCTGCTCGGGCTGGTGGTCGGCAG
CTTCCTCAATGTTGTGGTGTGGCGCCTGCCGAAGATGCTTGAGCGTGACTGGCGCCAGCAAGCCCATGATGTGCTCGGCC
TGCCCAGCGAAACGCCCGTGCCGACCTACAACCTGATGCTGCCGCACTCCGCGTGCCCGTATTGCGGACATCGGATCCGC
CCGTGGGAAAACATTCCGCTGCTCAGTTATCTGTGCCTGCGCGGGCGCTGCTCGGCTTGTTCGGCGCCGATCAGTAAACG
TTACCCGCTGACCGAACTGGCCTGCGGCCTGCTCTCGGCATTCATCGCCTGGCATCTGGGCTTCGGCTGGCCGGCGAGCT
TGCTGATCTTGCTGACGTGGGGCTTGCTGGCGATGAGTCTGATCGACTGCGAACATCAGCTGCTGCCCGATGTGCTGGTG
CTGCCGCTGCTGTGGCTGGGGCTGATCGTCAACAGCTTCGGCGTGTTCGTGGCGTTGCCCGATGCGTTGTGGGGCGCGGT
GGCGGGTTATCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAACTGCTCACCGGCAAGGACGGCATCGGTCATGGTGATT
TCAAGCTGCTGGCCTTGCTTGGCGCTTGGGGTGGCTGGCAGATTCTGCCGCTGACGATTCTTCTATCGTCCTTGGTGGGG
GCGATTTTGGGCGTTGTCATGCTGCGTCTGCGCGCCCAGGCAACCTCGACGCCGATCCCCTTCGGGCCCTTTCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.873	97.931	0.528
pilD	Vibrio campbellii strain DS40M4	52.632	98.276	0.517
pilD	Neisseria gonorrhoeae MS11	45.993	98.966	0.455
pilD	Acinetobacter nosocomialis M2	47.253	94.138	0.445
pilD	Acinetobacter baumannii D1279779	47.08	94.483	0.445