Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | ABXO38_RS13530 | Genome accession | NZ_CP160024 |
| Coordinates | 2740094..2740522 (+) | Length | 142 a.a. |
| NCBI ID | WP_065317076.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain 23EV612 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2735094..2745522
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABXO38_RS13470 (ABXO38_13460) | - | 2735743..2735982 (+) | 240 | WP_000548576.1 | helix-turn-helix transcriptional regulator | - |
| ABXO38_RS13475 (ABXO38_13465) | - | 2735995..2736441 (+) | 447 | WP_061393900.1 | hypothetical protein | - |
| ABXO38_RS13480 (ABXO38_13470) | - | 2736456..2736689 (+) | 234 | WP_065317074.1 | DUF2829 domain-containing protein | - |
| ABXO38_RS13485 (ABXO38_13475) | - | 2736670..2737035 (-) | 366 | WP_001128434.1 | hypothetical protein | - |
| ABXO38_RS13490 (ABXO38_13480) | - | 2737091..2737843 (+) | 753 | WP_065317075.1 | phage antirepressor KilAC domain-containing protein | - |
| ABXO38_RS13495 (ABXO38_13485) | - | 2737859..2737936 (+) | 78 | Protein_2616 | hypothetical protein | - |
| ABXO38_RS13500 (ABXO38_13490) | - | 2737951..2738163 (-) | 213 | WP_000461464.1 | hypothetical protein | - |
| ABXO38_RS13505 (ABXO38_13495) | - | 2738234..2738455 (+) | 222 | WP_000594788.1 | hypothetical protein | - |
| ABXO38_RS13510 (ABXO38_13500) | - | 2738448..2738609 (+) | 162 | WP_000048119.1 | DUF1270 family protein | - |
| ABXO38_RS13515 (ABXO38_13505) | - | 2738702..2738962 (+) | 261 | WP_000291093.1 | DUF1108 family protein | - |
| ABXO38_RS13520 (ABXO38_13510) | - | 2738977..2739456 (+) | 480 | WP_000002517.1 | siphovirus Gp157 family protein | - |
| ABXO38_RS13525 (ABXO38_13515) | - | 2739456..2740094 (+) | 639 | WP_001043063.1 | ERF family protein | - |
| ABXO38_RS13530 (ABXO38_13520) | ssbA | 2740094..2740522 (+) | 429 | WP_065317076.1 | single-stranded DNA-binding protein | Machinery gene |
| ABXO38_RS13535 (ABXO38_13525) | - | 2740536..2741231 (+) | 696 | WP_015980404.1 | putative HNHc nuclease | - |
| ABXO38_RS13540 (ABXO38_13530) | - | 2741203..2742006 (+) | 804 | WP_000504986.1 | phage replisome organizer N-terminal domain-containing protein | - |
| ABXO38_RS13545 (ABXO38_13535) | - | 2742016..2742789 (+) | 774 | WP_000803049.1 | ATP-binding protein | - |
| ABXO38_RS13550 (ABXO38_13540) | - | 2742783..2742944 (+) | 162 | WP_065317237.1 | hypothetical protein | - |
| ABXO38_RS13555 (ABXO38_13545) | - | 2742957..2743178 (+) | 222 | WP_001123688.1 | DUF3269 family protein | - |
| ABXO38_RS13560 (ABXO38_13550) | - | 2743189..2743593 (+) | 405 | WP_015980406.1 | DUF1064 domain-containing protein | - |
| ABXO38_RS13565 (ABXO38_13555) | - | 2743598..2743783 (+) | 186 | WP_015980407.1 | DUF3113 family protein | - |
| ABXO38_RS13570 (ABXO38_13560) | - | 2743784..2744052 (+) | 269 | Protein_2631 | helix-turn-helix domain-containing protein | - |
| ABXO38_RS13575 (ABXO38_13565) | - | 2744053..2744424 (+) | 372 | Protein_2632 | SA1788 family PVL leukocidin-associated protein | - |
| ABXO38_RS13580 (ABXO38_13570) | - | 2744425..2744673 (+) | 249 | WP_015980409.1 | phi PVL orf 51-like protein | - |
| ABXO38_RS13585 (ABXO38_13575) | - | 2744745..2744972 (+) | 228 | Protein_2634 | hypothetical protein | - |
| ABXO38_RS13590 (ABXO38_13580) | - | 2744965..2745213 (+) | 249 | WP_065317236.1 | DUF1024 family protein | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 16126.67 Da Isoelectric Point: 5.8724
>NTDB_id=1017123 ABXO38_RS13530 WP_065317076.1 2740094..2740522(+) (ssbA) [Staphylococcus aureus strain 23EV612]
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLFKGSLAGVDGRLQSR
SYENKDGQRVFVTEVVADSVQFLEPKNNNQQQNNNYHQQRQTQTGNNPFDNTTAITDDDLPF
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLFKGSLAGVDGRLQSR
SYENKDGQRVFVTEVVADSVQFLEPKNNNQQQNNNYHQQRQTQTGNNPFDNTTAITDDDLPF
Nucleotide
Download Length: 429 bp
>NTDB_id=1017123 ABXO38_RS13530 WP_065317076.1 2740094..2740522(+) (ssbA) [Staphylococcus aureus strain 23EV612]
ATGTTAAACAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCGAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATTCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGACGGGCAACGTGTGTTTGTTACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACAAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACCTCCCGTTCTGA
ATGTTAAACAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCGAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATTCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGACGGGCAACGTGTGTTTGTTACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACAAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACCTCCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
58.721 |
100 |
0.711 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.176 |
100 |
0.613 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
74.648 |
0.437 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
42.657 |
100 |
0.43 |
| ssbA | Streptococcus mutans UA159 |
40.845 |
100 |
0.408 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
40.845 |
100 |
0.408 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
40.845 |
100 |
0.408 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
40.141 |
100 |
0.401 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
40.141 |
100 |
0.401 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
40.141 |
100 |
0.401 |
| ssbB/cilA | Streptococcus mitis SK321 |
40.141 |
100 |
0.401 |