Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | NSQ88_RS17705 | Genome accession | NZ_CP159977 |
| Coordinates | 3662754..3663110 (-) | Length | 118 a.a. |
| NCBI ID | WP_041846678.1 | Uniprot ID | - |
| Organism | Caldifermentibacillus hisashii strain FSL W8-0751 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3657754..3668110
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NSQ88_RS17695 (NSQ88_17695) | - | 3658210..3661182 (+) | 2973 | WP_363550660.1 | DEAD/DEAH box helicase | - |
| NSQ88_RS17700 (NSQ88_17700) | - | 3662177..3662341 (-) | 165 | WP_156103279.1 | hypothetical protein | - |
| NSQ88_RS17705 (NSQ88_17705) | ssbB | 3662754..3663110 (-) | 357 | WP_041846678.1 | single-stranded DNA-binding protein | Machinery gene |
| NSQ88_RS17710 (NSQ88_17710) | - | 3663410..3663844 (+) | 435 | WP_034773166.1 | YwpF family protein | - |
| NSQ88_RS17715 (NSQ88_17715) | - | 3663891..3664340 (-) | 450 | WP_342014554.1 | hypothetical protein | - |
| NSQ88_RS17720 (NSQ88_17720) | fabZ | 3664492..3664914 (-) | 423 | WP_034773167.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| NSQ88_RS17725 (NSQ88_17725) | - | 3664972..3665277 (-) | 306 | WP_227092411.1 | DNA-directed RNA polymerase subunit beta | - |
| NSQ88_RS17730 (NSQ88_17730) | - | 3665526..3666377 (-) | 852 | WP_309240457.1 | flagellar hook-basal body protein | - |
| NSQ88_RS17735 (NSQ88_17735) | - | 3666508..3667332 (-) | 825 | WP_034773170.1 | flagellar hook-basal body protein | - |
Sequence
Protein
Download Length: 118 a.a. Molecular weight: 13120.83 Da Isoelectric Point: 8.4828
>NTDB_id=1016945 NSQ88_RS17705 WP_041846678.1 3662754..3663110(-) (ssbB) [Caldifermentibacillus hisashii strain FSL W8-0751]
MINQVTLVGRLTRDPELKLTQEGVALTNITLAVNRNYRSTSGSIETDFVQCTLWRRAAENTVQYCQKGSIIGIIGRIQTR
NYENSEGKRVYVTEVVADSVRFLGGRPAEDKEIAATNA
MINQVTLVGRLTRDPELKLTQEGVALTNITLAVNRNYRSTSGSIETDFVQCTLWRRAAENTVQYCQKGSIIGIIGRIQTR
NYENSEGKRVYVTEVVADSVRFLGGRPAEDKEIAATNA
Nucleotide
Download Length: 357 bp
>NTDB_id=1016945 NSQ88_RS17705 WP_041846678.1 3662754..3663110(-) (ssbB) [Caldifermentibacillus hisashii strain FSL W8-0751]
TTGATTAACCAGGTAACATTGGTAGGAAGACTGACGAGGGACCCGGAATTGAAATTAACGCAAGAAGGGGTTGCCTTAAC
AAATATTACGCTGGCAGTGAATCGAAATTATCGGTCCACGAGCGGCAGTATTGAAACAGATTTTGTTCAGTGCACACTCT
GGCGGCGAGCAGCAGAGAACACCGTACAATATTGCCAAAAGGGTTCGATCATTGGAATTATTGGCCGAATCCAGACGCGA
AATTATGAAAATAGTGAAGGGAAAAGGGTTTATGTTACGGAAGTTGTTGCTGATAGTGTCCGCTTTTTGGGAGGCAGGCC
GGCAGAGGACAAGGAAATCGCCGCAACAAATGCATAA
TTGATTAACCAGGTAACATTGGTAGGAAGACTGACGAGGGACCCGGAATTGAAATTAACGCAAGAAGGGGTTGCCTTAAC
AAATATTACGCTGGCAGTGAATCGAAATTATCGGTCCACGAGCGGCAGTATTGAAACAGATTTTGTTCAGTGCACACTCT
GGCGGCGAGCAGCAGAGAACACCGTACAATATTGCCAAAAGGGTTCGATCATTGGAATTATTGGCCGAATCCAGACGCGA
AATTATGAAAATAGTGAAGGGAAAAGGGTTTATGTTACGGAAGTTGTTGCTGATAGTGTCCGCTTTTTGGGAGGCAGGCC
GGCAGAGGACAAGGAAATCGCCGCAACAAATGCATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
62.385 |
92.373 |
0.576 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.282 |
87.288 |
0.5 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.887 |
89.831 |
0.466 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
43.396 |
89.831 |
0.39 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
42.453 |
89.831 |
0.381 |
| ssbA | Streptococcus mutans UA159 |
42.453 |
89.831 |
0.381 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
41.509 |
89.831 |
0.373 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
41.509 |
89.831 |
0.373 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
41.509 |
89.831 |
0.373 |
| ssbB/cilA | Streptococcus mitis SK321 |
41.509 |
89.831 |
0.373 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
40.566 |
89.831 |
0.364 |