Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   DQM44_RS10020 Genome accession   NZ_LS483318
Coordinates   2001359..2002630 (-) Length   423 a.a.
NCBI ID   WP_003058772.1    Uniprot ID   A0ABU0A6N8
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC5370     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1996359..2007630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM44_RS09990 (NCTC5370_02047) - 1996414..1997976 (-) 1563 WP_022555245.1 hypothetical protein -
  DQM44_RS09995 (NCTC5370_02049) - 1998313..1998618 (-) 306 WP_003058733.1 DUF1292 domain-containing protein -
  DQM44_RS10000 (NCTC5370_02050) ruvX 1998629..1999048 (-) 420 WP_003053103.1 Holliday junction resolvase RuvX -
  DQM44_RS10005 (NCTC5370_02051) - 1999045..1999314 (-) 270 WP_003045720.1 IreB family regulatory phosphoprotein -
  DQM44_RS10010 (NCTC5370_02052) spx 1999426..1999824 (-) 399 WP_003053105.1 transcriptional regulator Spx -
  DQM44_RS10015 (NCTC5370_02053) recA 2000118..2001254 (-) 1137 WP_003058758.1 recombinase RecA Machinery gene
  DQM44_RS10020 (NCTC5370_02054) cinA 2001359..2002630 (-) 1272 WP_003058772.1 competence/damage-inducible protein A Machinery gene
  DQM44_RS10025 (NCTC5370_02055) - 2002754..2003107 (-) 354 WP_003058738.1 VOC family protein -
  DQM44_RS10030 (NCTC5370_02056) - 2003110..2003682 (-) 573 WP_003058799.1 DNA-3-methyladenine glycosylase I -
  DQM44_RS10035 (NCTC5370_02057) ruvA 2003692..2004285 (-) 594 WP_022555247.1 Holliday junction branch migration protein RuvA Machinery gene
  DQM44_RS10040 (NCTC5370_02058) - 2004287..2005507 (-) 1221 WP_022555248.1 MFS transporter -
  DQM44_RS10045 (NCTC5370_02059) hexB 2005518..2007500 (-) 1983 WP_044565652.1 DNA mismatch repair endonuclease MutL Machinery gene

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46007.41 Da        Isoelectric Point: 4.7637

>NTDB_id=1016774 DQM44_RS10020 WP_003058772.1 2001359..2002630(-) (cinA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC5370]
MKAELITVGTEILTGQIVNTNAQFLSEKMAELGIDVYFQTAVGDNEERLLSVIATASQRSDLVILCGGLGPTEDDLTKQT
LAKYLNRDLVFEEQASQKLDAFYASRKESSRTANNAKQAQIIAGSSPLQNRTGLAVGGLITVNEVTYVVLPGPPSELKPM
VNEELLPFLSTQSRKLYSRVLRFFGIGESQLVTVLSDLIENQTDPTIAPYAKTGEVTLRLSTKAENQTLADTKLDPLEAQ
LLSRKTPDNQSLSDFLYGYREDNSLAREVFELLVKYDKTITAAESLTAGLFQSTLASFSGASQVFNGGFVTYSMEEKARM
LGIPLEDLISHGVVSAYTAEKMAEQARLLTGADIGVSLTGVAGPDMLEEQPAGTVFIGLATQNKVESIKVLISGRSRSDV
RHIATLHAFNMVRKTLLKPENLL

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=1016774 DQM44_RS10020 WP_003058772.1 2001359..2002630(-) (cinA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC5370]
ATGAAAGCTGAACTGATTACAGTAGGTACCGAAATTTTGACTGGTCAAATTGTGAATACCAATGCTCAATTTCTGTCGGA
AAAAATGGCAGAGCTAGGTATTGATGTCTATTTTCAAACGGCTGTTGGGGATAACGAGGAGCGTTTACTTTCAGTGATTG
CAACTGCTAGTCAGCGGAGTGATTTGGTCATTTTATGCGGTGGTCTTGGCCCCACGGAAGATGATTTAACCAAGCAGACT
TTAGCAAAATATCTTAATAGAGATTTGGTCTTTGAAGAACAAGCTAGTCAAAAATTGGACGCTTTTTATGCTAGTCGTAA
AGAGTCGTCTCGAACGGCAAATAATGCTAAGCAGGCTCAAATCATTGCTGGTTCAAGCCCTCTGCAAAATAGAACAGGAC
TTGCAGTGGGTGGCTTAATCACTGTTAATGAGGTGACTTATGTTGTTTTACCCGGGCCGCCAAGTGAATTAAAACCTATG
GTTAATGAGGAACTGCTTCCTTTTTTGTCCACACAATCTCGCAAACTTTATTCGAGAGTTTTACGATTTTTTGGGATTGG
TGAGAGTCAGCTGGTGACGGTCTTATCAGACCTTATTGAGAATCAAACTGATCCTACTATTGCACCTTATGCCAAAACTG
GTGAAGTGACCCTTCGTTTATCAACGAAAGCTGAAAATCAAACATTAGCAGATACGAAATTAGATCCACTAGAAGCGCAG
CTATTGTCGCGAAAAACTCCTGACAACCAGTCGTTATCAGATTTTCTTTATGGCTATAGGGAGGATAATTCCTTAGCGCG
TGAGGTATTTGAGCTCTTAGTAAAATATGATAAGACAATTACTGCAGCAGAAAGTCTAACCGCGGGATTATTTCAGTCAA
CTTTGGCGAGTTTTTCAGGAGCTTCTCAAGTATTCAATGGAGGCTTTGTGACTTATAGCATGGAAGAAAAAGCGAGAATG
CTAGGCATTCCTTTAGAGGATTTGATATCGCATGGAGTTGTTAGTGCTTATACGGCCGAGAAGATGGCGGAGCAAGCAAG
GTTATTGACTGGTGCTGATATTGGGGTAAGTTTAACAGGTGTTGCCGGACCAGATATGTTGGAGGAACAGCCTGCAGGTA
CAGTTTTCATTGGCCTTGCCACTCAAAATAAGGTAGAATCAATAAAGGTTTTGATTAGCGGGCGAAGCCGTTCAGATGTG
CGTCATATTGCGACTTTACATGCTTTTAATATGGTCCGTAAAACTTTATTAAAACCTGAAAATTTGCTATAA

Domains

Predicted by InterProScan.

Competence-damaged protein (CinA)

(263-416)

Damage-inducible protein CinA KH domain (CinA_KH)

(178-243)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

72.577

100

0.726
  cinA Streptococcus mitis SK321

70.983

98.582

0.7
  cinA Streptococcus mitis NCTC 12261

70.024

98.582

0.69
  cinA Streptococcus pneumoniae TIGR4

69.784

98.582

0.688
  cinA Streptococcus pneumoniae R36A

69.784

98.582

0.688
  cinA Streptococcus pneumoniae Rx1

69.784

98.582

0.688
  cinA Streptococcus pneumoniae R6

69.784

98.582

0.688
  cinA Streptococcus pneumoniae D39

69.544

98.582

0.686
  cinA Streptococcus suis isolate S10

52.644

98.345

0.518
  cinA Bacillus subtilis subsp. subtilis str. 168

45.455

98.818

0.449