Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   DQM44_RS10035 Genome accession   NZ_LS483318
Coordinates   2003692..2004285 (-) Length   197 a.a.
NCBI ID   WP_022555247.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC5370     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1998692..2009285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM44_RS10005 (NCTC5370_02051) - 1999045..1999314 (-) 270 WP_003045720.1 IreB family regulatory phosphoprotein -
  DQM44_RS10010 (NCTC5370_02052) spx 1999426..1999824 (-) 399 WP_003053105.1 transcriptional regulator Spx -
  DQM44_RS10015 (NCTC5370_02053) recA 2000118..2001254 (-) 1137 WP_003058758.1 recombinase RecA Machinery gene
  DQM44_RS10020 (NCTC5370_02054) cinA 2001359..2002630 (-) 1272 WP_003058772.1 competence/damage-inducible protein A Machinery gene
  DQM44_RS10025 (NCTC5370_02055) - 2002754..2003107 (-) 354 WP_003058738.1 VOC family protein -
  DQM44_RS10030 (NCTC5370_02056) - 2003110..2003682 (-) 573 WP_003058799.1 DNA-3-methyladenine glycosylase I -
  DQM44_RS10035 (NCTC5370_02057) ruvA 2003692..2004285 (-) 594 WP_022555247.1 Holliday junction branch migration protein RuvA Machinery gene
  DQM44_RS10040 (NCTC5370_02058) - 2004287..2005507 (-) 1221 WP_022555248.1 MFS transporter -
  DQM44_RS10045 (NCTC5370_02059) hexB 2005518..2007500 (-) 1983 WP_044565652.1 DNA mismatch repair endonuclease MutL Machinery gene

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21711.97 Da        Isoelectric Point: 5.7322

>NTDB_id=1016775 DQM44_RS10035 WP_022555247.1 2003692..2004285(-) (ruvA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC5370]
MYDYIKGQLTKITAKYIVVETNGLGYIINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI
GPTTALAIVAVDDNQGLVNAIDTSDIKYLTKFPKIGKKTAQQMVLDLAGKFVEVPQETSKAKPSTSSNNDQLDEAIEALL
ALGYKAAELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 594 bp        

>NTDB_id=1016775 DQM44_RS10035 WP_022555247.1 2003692..2004285(-) (ruvA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC5370]
ATGTACGATTATATTAAAGGTCAATTGACCAAAATTACGGCAAAATACATTGTCGTTGAAACAAATGGACTAGGCTATAT
TATCAATGTAGCAAATCCTTATAGCTTTACAGATAGTGTCAACCAACTGGTAACTATTTACCTGCATCAAGTGATTCGTG
AGGATGCTCACTTGTTGTTTGGGTTTCATACGGAAGACGAAAAAGATGTTTTTCTGAAATTAATTTCTGTATCAGGCATT
GGTCCGACAACAGCTCTCGCTATTGTGGCAGTTGATGATAATCAGGGGCTTGTTAATGCCATTGATACCAGTGACATCAA
ATACTTGACTAAATTTCCTAAAATCGGGAAAAAAACGGCACAACAGATGGTTCTTGACTTAGCCGGAAAATTTGTGGAGG
TTCCACAAGAGACCAGTAAAGCAAAACCGTCTACCTCCTCAAACAATGACCAGTTGGATGAGGCTATTGAAGCCCTTCTT
GCCCTAGGTTATAAAGCAGCAGAGCTGAAAAAAATTCGTGCCTTCTTTGAGGGGACCTCTGAGACGGCAGAGCAATACAT
CAAATCAGCATTGAAACTGTTAATGAAAGGGTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(150-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

67.513

100

0.675
  ruvA Streptococcus pneumoniae R6

67.513

100

0.675
  ruvA Streptococcus pneumoniae D39

67.513

100

0.675
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.409

100

0.406

Multiple sequence alignment