Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABXT62_RS04065 Genome accession   NZ_CP159826
Coordinates   864823..866043 (-) Length   406 a.a.
NCBI ID   WP_415357265.1    Uniprot ID   -
Organism   Halioglobus sp. Uisw_031     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 859823..871043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXT62_RS04045 (ABXT62_04050) argJ 861691..862917 (+) 1227 WP_415357261.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  ABXT62_RS04050 (ABXT62_04055) mutT 862918..863316 (+) 399 WP_415357262.1 8-oxo-dGTP diphosphatase MutT -
  ABXT62_RS04055 (ABXT62_04060) coaE 863326..863931 (-) 606 WP_415357263.1 dephospho-CoA kinase -
  ABXT62_RS04060 (ABXT62_04065) pilD 863933..864796 (-) 864 WP_415357264.1 prepilin peptidase Machinery gene
  ABXT62_RS04065 (ABXT62_04070) pilC 864823..866043 (-) 1221 WP_415357265.1 type II secretion system F family protein Machinery gene
  ABXT62_RS04070 (ABXT62_04075) pilB 866084..867805 (-) 1722 WP_415357266.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABXT62_RS04075 (ABXT62_04080) - 868230..868739 (+) 510 WP_415357267.1 pilin -
  ABXT62_RS04080 (ABXT62_04085) - 868848..871025 (-) 2178 WP_415357268.1 malate synthase G -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 43740.33 Da        Isoelectric Point: 9.7150

>NTDB_id=1016065 ABXT62_RS04065 WP_415357265.1 864823..866043(-) (pilC) [Halioglobus sp. Uisw_031]
MAASAIRTDIFTWSGTDKSGRPGKGEITAISQAMARAQLRQQGIKPNNVRKKPKPLFGGKGKAIKPADIAIFTRQLATML
KAGVPLVQSFDIVEDGLEKPQMKALVVSIKNDVASGSGLAPSLAKHPRYFDELFCSLVGSGEDSGTLEVMLDRVATYKEK
SEQLKAKIKKAMTYPTAVVCIALVVTAILLIKVVPVFANTFKNFGSELPAFTQFVMDISDFVIAWWFVMFGVIVGTIFAF
REMKLRSVRFSEFLDRAALKTPVVGGIIHDAVIARFSRTLATTFAAGVPLVEALNSTAGAAGNSVYAKAIRRIRDDVTTG
NTLYSAIKSTGLFPNLLLQMVSIGEESGALDDMLDKVATHYEEAVDNAVDSLSSLMEPLIMSVLGVLVGGLMIAMYLPIF
MLGSVI

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=1016065 ABXT62_RS04065 WP_415357265.1 864823..866043(-) (pilC) [Halioglobus sp. Uisw_031]
ATGGCAGCAAGCGCAATCAGAACCGACATTTTTACCTGGAGCGGGACAGACAAAAGTGGCCGTCCCGGCAAGGGCGAAAT
CACGGCTATCAGCCAAGCCATGGCCAGAGCACAATTACGCCAGCAGGGCATCAAGCCCAACAACGTGCGTAAAAAACCCA
AGCCATTGTTCGGGGGCAAGGGTAAAGCCATCAAGCCAGCTGATATCGCTATTTTCACTCGACAGCTGGCAACGATGCTC
AAGGCAGGCGTGCCACTGGTGCAAAGTTTTGACATCGTCGAAGACGGTTTAGAAAAGCCCCAAATGAAAGCGTTGGTCGT
CAGCATCAAAAATGACGTAGCCTCGGGCAGCGGACTTGCGCCTTCTCTGGCGAAACACCCACGTTACTTCGATGAGCTGT
TCTGTAGCCTGGTTGGATCAGGTGAAGACTCGGGCACACTGGAGGTCATGCTGGATCGCGTGGCCACCTATAAGGAAAAA
AGCGAACAGCTAAAAGCCAAAATCAAAAAGGCGATGACCTATCCAACCGCAGTGGTCTGTATTGCACTGGTCGTAACCGC
TATCCTACTGATCAAAGTGGTGCCGGTTTTTGCCAATACCTTTAAGAATTTCGGTTCTGAACTGCCTGCGTTCACACAGT
TCGTTATGGATATATCGGACTTCGTCATCGCCTGGTGGTTCGTCATGTTCGGGGTCATTGTCGGTACAATATTTGCGTTT
CGAGAGATGAAGCTACGTTCTGTCCGTTTTTCCGAGTTTCTGGATAGGGCCGCACTGAAAACACCCGTTGTTGGCGGCAT
CATTCATGATGCAGTAATCGCGCGCTTCTCTCGCACGTTAGCCACCACGTTTGCCGCTGGTGTGCCACTGGTGGAGGCCT
TGAATTCCACCGCCGGCGCAGCAGGCAACTCCGTCTATGCGAAAGCTATTCGCCGCATCCGTGACGACGTTACCACGGGC
AACACACTTTACAGCGCCATCAAATCTACCGGGCTATTTCCCAATCTGCTGCTGCAAATGGTGTCTATTGGAGAGGAATC
CGGCGCACTCGATGACATGCTGGACAAGGTGGCCACCCACTATGAAGAGGCTGTAGATAATGCGGTCGATAGCCTCAGCT
CCCTGATGGAGCCCCTGATAATGTCTGTGCTTGGGGTCCTTGTGGGCGGTCTGATGATTGCTATGTACCTGCCCATATTT
ATGCTGGGATCGGTCATCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.867

100

0.589
  pilC Acinetobacter baumannii D1279779

57.935

97.783

0.567
  pilC Acinetobacter baylyi ADP1

57.538

98.03

0.564
  pilC Legionella pneumophila strain ERS1305867

56.818

97.537

0.554
  pilC Vibrio cholerae strain A1552

43.939

97.537

0.429
  pilG Neisseria gonorrhoeae MS11

44.648

94.335

0.421
  pilG Neisseria meningitidis 44/76-A

44.648

94.335

0.421
  pilC Vibrio campbellii strain DS40M4

42.172

97.537

0.411
  pilC Thermus thermophilus HB27

37.343

98.276

0.367

Multiple sequence alignment