Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ABXT62_RS04060 Genome accession   NZ_CP159826
Coordinates   863933..864796 (-) Length   287 a.a.
NCBI ID   WP_415357264.1    Uniprot ID   -
Organism   Halioglobus sp. Uisw_031     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 858933..869796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXT62_RS04040 (ABXT62_04045) secA 858951..861650 (+) 2700 WP_415357260.1 preprotein translocase subunit SecA -
  ABXT62_RS04045 (ABXT62_04050) argJ 861691..862917 (+) 1227 WP_415357261.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  ABXT62_RS04050 (ABXT62_04055) mutT 862918..863316 (+) 399 WP_415357262.1 8-oxo-dGTP diphosphatase MutT -
  ABXT62_RS04055 (ABXT62_04060) coaE 863326..863931 (-) 606 WP_415357263.1 dephospho-CoA kinase -
  ABXT62_RS04060 (ABXT62_04065) pilD 863933..864796 (-) 864 WP_415357264.1 prepilin peptidase Machinery gene
  ABXT62_RS04065 (ABXT62_04070) pilC 864823..866043 (-) 1221 WP_415357265.1 type II secretion system F family protein Machinery gene
  ABXT62_RS04070 (ABXT62_04075) pilB 866084..867805 (-) 1722 WP_415357266.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABXT62_RS04075 (ABXT62_04080) - 868230..868739 (+) 510 WP_415357267.1 pilin -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 31470.74 Da        Isoelectric Point: 6.3175

>NTDB_id=1016064 ABXT62_RS04060 WP_415357264.1 863933..864796(-) (pilD) [Halioglobus sp. Uisw_031]
MPETVVPIGLLSVGLLCLGLLVGSFLNVVIYRLPLIMESRWRRDCCELLEVEPESAEAPFNLAIPNSHCPHCKTAIKPWH
NIPVLSYVALGGKCSNCAVRISPRYPLLELVTGLMTLALAWHFDVSLALLGALAFTWSLIALTMIDMDHQLLPDDITLPL
LWLGLLFNLSATYVSLPDAVIGAIMGYLSLWSIYWIFKLITGKEGMGYGDFKLLAALGAWMGWQALPMIILLSSLVGAVC
GIALMVIKRRGKDIPIPFGPYLAMAGWLVLLWGDTLMSRYSSALGID

Nucleotide


Download         Length: 864 bp        

>NTDB_id=1016064 ABXT62_RS04060 WP_415357264.1 863933..864796(-) (pilD) [Halioglobus sp. Uisw_031]
ATGCCAGAAACCGTCGTGCCAATAGGCCTGCTCAGTGTTGGCCTGCTGTGTCTTGGGCTGCTTGTCGGCAGTTTTCTCAA
TGTCGTCATCTATCGCCTACCGCTGATCATGGAATCCCGGTGGCGGCGCGATTGCTGCGAATTATTGGAAGTCGAGCCGG
AAAGCGCGGAGGCGCCGTTCAACCTGGCCATACCGAATTCCCACTGCCCTCACTGTAAGACGGCTATAAAGCCGTGGCAC
AACATTCCCGTCCTCAGCTACGTTGCGCTAGGCGGTAAGTGCAGCAACTGCGCAGTGCGAATTTCGCCACGTTACCCCCT
TTTGGAATTGGTGACTGGCCTGATGACATTAGCACTGGCGTGGCATTTCGATGTGTCTCTCGCCTTGCTCGGTGCCCTCG
CGTTTACGTGGTCGTTGATTGCTCTGACCATGATCGACATGGACCACCAGTTGCTACCCGACGACATCACCCTGCCGCTG
CTGTGGCTAGGCTTGCTGTTCAACCTCAGTGCAACTTACGTCAGCCTGCCGGACGCTGTGATCGGGGCCATCATGGGCTA
CCTCTCGCTGTGGAGTATTTATTGGATATTCAAGTTGATCACCGGTAAAGAGGGAATGGGTTACGGCGATTTCAAGTTGC
TCGCCGCATTGGGCGCGTGGATGGGCTGGCAGGCGCTTCCGATGATTATTTTGCTGTCCTCTTTGGTCGGTGCTGTCTGC
GGTATTGCACTGATGGTTATCAAGCGTCGCGGCAAAGATATCCCGATTCCCTTTGGGCCTTACCTGGCCATGGCGGGCTG
GCTCGTATTGCTCTGGGGCGACACCCTTATGTCGCGCTATTCAAGCGCGCTGGGAATAGACTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(134-242)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(18-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

57.09

93.38

0.533
  pilD Vibrio campbellii strain DS40M4

53.676

94.774

0.509
  pilD Acinetobacter baumannii D1279779

50.923

94.425

0.481
  pilD Acinetobacter nosocomialis M2

50.554

94.425

0.477
  pilD Neisseria gonorrhoeae MS11

50.769

90.592

0.46

Multiple sequence alignment