Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABV408_RS07650 Genome accession   NZ_CP159578
Coordinates   1673484..1674710 (-) Length   408 a.a.
NCBI ID   WP_353981837.1    Uniprot ID   -
Organism   Salinicola endophyticus strain HNIBRBA4755     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1668484..1679710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABV408_RS07625 (ABV408_07625) argJ 1669296..1670504 (+) 1209 WP_353981832.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  ABV408_RS07630 (ABV408_07630) - 1670586..1671539 (+) 954 WP_353981833.1 Nudix family hydrolase -
  ABV408_RS07635 (ABV408_07635) yacG 1671646..1671897 (-) 252 WP_353981834.1 DNA gyrase inhibitor YacG -
  ABV408_RS07640 (ABV408_07640) coaE 1671894..1672541 (-) 648 WP_353981835.1 dephospho-CoA kinase -
  ABV408_RS07645 (ABV408_07645) pilD 1672538..1673398 (-) 861 WP_353981836.1 A24 family peptidase Machinery gene
  ABV408_RS07650 (ABV408_07650) pilC 1673484..1674710 (-) 1227 WP_353981837.1 type II secretion system F family protein Machinery gene
  ABV408_RS07655 (ABV408_07655) pilB 1674792..1676519 (-) 1728 WP_353981838.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABV408_RS07660 (ABV408_07660) - 1676762..1677241 (+) 480 WP_353981839.1 pilin -
  ABV408_RS07665 (ABV408_07665) - 1677316..1677600 (-) 285 WP_035473735.1 hypothetical protein -
  ABV408_RS07670 (ABV408_07670) - 1677852..1679303 (+) 1452 WP_353981840.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44861.52 Da        Isoelectric Point: 10.4968

>NTDB_id=1014606 ABV408_RS07650 WP_353981837.1 1673484..1674710(-) (pilC) [Salinicola endophyticus strain HNIBRBA4755]
MAATAKPPKRLVIHRWHWRGKNLRGETVSGELIASEVSEVRQELARQKIIVKRITRKTSPFGIGRVRQRDITLFARQLAT
MIRAGVPLLQACKVVAETLRNPAMRNLVENLGNDISAGASFSQALSRHPQRFDRMFVNMVAAGEQSGALDRMLERLASYR
EKIDTLKGRIKKALYYPVAVIAVGIGVTALLLIEVVPQFESLFAGFGAELPAFTRFTIDLSELAQAYWWQALLALVLTGI
GLRRAIKRSPRFAYRVDRLLLRLPVLGSILDKGSIARFSRTLATTFNAGVPLVEALETAAGATGNRVHQRAIIGLRDDVG
DGQQLAFAMRRAGIFPIMAVQMVSIGEEAGDLDTMLDKVADFYEEEVDNQVDALTSLLEPLIIVVLGVLVGGLVASMYLP
IFQMGSAI

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1014606 ABV408_RS07650 WP_353981837.1 1673484..1674710(-) (pilC) [Salinicola endophyticus strain HNIBRBA4755]
ATGGCAGCAACGGCGAAGCCTCCCAAGCGACTGGTGATCCACCGCTGGCACTGGCGCGGCAAGAATCTGCGCGGCGAGAC
GGTCAGCGGCGAACTGATCGCCAGTGAGGTCAGCGAGGTGCGCCAGGAGCTGGCGCGCCAGAAGATCATCGTCAAGCGCA
TTACGCGCAAGACCAGCCCATTCGGCATCGGCCGGGTCCGCCAACGCGACATCACCCTGTTCGCGCGCCAACTGGCTACC
ATGATCCGGGCCGGCGTGCCGCTGCTGCAGGCGTGCAAGGTGGTCGCCGAGACGCTGCGCAACCCGGCGATGCGCAATCT
GGTCGAAAACCTGGGCAACGATATCAGCGCCGGAGCCAGCTTCTCGCAGGCGCTGTCACGTCATCCGCAGCGCTTCGATC
GCATGTTCGTCAACATGGTCGCCGCCGGCGAACAGTCGGGTGCGCTGGATCGCATGCTCGAACGTCTGGCCAGCTATCGC
GAAAAGATCGATACCCTGAAAGGGCGCATCAAGAAAGCGCTGTACTATCCGGTCGCGGTGATTGCGGTGGGGATCGGCGT
CACCGCGCTGCTGTTGATCGAGGTGGTGCCGCAGTTCGAGAGCCTGTTCGCCGGCTTCGGCGCCGAGCTGCCGGCTTTCA
CGCGCTTCACCATCGATCTCTCCGAGCTGGCCCAGGCGTACTGGTGGCAGGCACTGCTAGCGCTGGTGCTCACGGGTATC
GGACTGCGCCGGGCGATCAAGCGCTCGCCGCGTTTCGCCTACCGGGTCGATCGGCTCCTGCTGCGCCTGCCAGTGCTCGG
CAGCATCCTCGACAAGGGCTCGATCGCGCGCTTCTCACGCACCCTGGCGACGACCTTCAATGCTGGCGTTCCCCTGGTGG
AAGCGCTCGAGACCGCCGCCGGTGCGACCGGCAACCGCGTGCACCAGCGCGCGATCATCGGCCTGCGCGACGATGTCGGT
GACGGTCAGCAGCTCGCCTTCGCCATGCGCCGGGCGGGGATCTTCCCGATCATGGCGGTGCAGATGGTGAGCATCGGTGA
AGAAGCGGGTGACCTCGACACCATGCTCGACAAGGTCGCCGACTTCTACGAAGAGGAGGTGGACAACCAGGTCGACGCGC
TGACCTCGCTGCTGGAGCCGCTGATCATCGTGGTGCTGGGGGTGCTGGTGGGTGGTCTGGTGGCGTCGATGTATCTGCCG
ATTTTTCAGATGGGCTCGGCCATTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

51.899

96.814

0.502
  pilC Acinetobacter baylyi ADP1

50.248

99.02

0.498
  pilC Acinetobacter baumannii D1279779

50.126

97.304

0.488
  pilC Legionella pneumophila strain ERS1305867

50

97.059

0.485
  pilG Neisseria meningitidis 44/76-A

43.873

100

0.439
  pilG Neisseria gonorrhoeae MS11

43.704

99.265

0.434
  pilC Vibrio cholerae strain A1552

43.596

99.51

0.434
  pilC Vibrio campbellii strain DS40M4

42.893

98.284

0.422
  pilC Thermus thermophilus HB27

43.917

82.598

0.363

Multiple sequence alignment