Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ABV408_RS07645 Genome accession   NZ_CP159578
Coordinates   1672538..1673398 (-) Length   286 a.a.
NCBI ID   WP_353981836.1    Uniprot ID   -
Organism   Salinicola endophyticus strain HNIBRBA4755     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1667538..1678398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABV408_RS07625 (ABV408_07625) argJ 1669296..1670504 (+) 1209 WP_353981832.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  ABV408_RS07630 (ABV408_07630) - 1670586..1671539 (+) 954 WP_353981833.1 Nudix family hydrolase -
  ABV408_RS07635 (ABV408_07635) yacG 1671646..1671897 (-) 252 WP_353981834.1 DNA gyrase inhibitor YacG -
  ABV408_RS07640 (ABV408_07640) coaE 1671894..1672541 (-) 648 WP_353981835.1 dephospho-CoA kinase -
  ABV408_RS07645 (ABV408_07645) pilD 1672538..1673398 (-) 861 WP_353981836.1 A24 family peptidase Machinery gene
  ABV408_RS07650 (ABV408_07650) pilC 1673484..1674710 (-) 1227 WP_353981837.1 type II secretion system F family protein Machinery gene
  ABV408_RS07655 (ABV408_07655) pilB 1674792..1676519 (-) 1728 WP_353981838.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABV408_RS07660 (ABV408_07660) - 1676762..1677241 (+) 480 WP_353981839.1 pilin -
  ABV408_RS07665 (ABV408_07665) - 1677316..1677600 (-) 285 WP_035473735.1 hypothetical protein -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 31007.10 Da        Isoelectric Point: 8.9766

>NTDB_id=1014605 ABV408_RS07645 WP_353981836.1 1672538..1673398(-) (pilD) [Salinicola endophyticus strain HNIBRBA4755]
MSQLSPWLLWPLAFVLGACLGSFINVVIVRLPVMLMRRWRAEARAALELEAEPLPRYDLLLPRSHCPACRQFIAWHDNLP
LIGWLKRRGRCATCAAPISPQYPLVELLAGGVSLAALAIHGASIETLWLVGACLVLLALAVIDWRTQLLPDALTLPLLWA
GLLYQWTYHPLWLGSAVIGAAAGYLVLWAVYWLFKLTTGKEGMGHGDFKLMAALGAWLGWQNLPLLLLLSAGAGTLIGIA
LIIGRRHERGQPLPFGPFIALAGWVALLVGAPLQAGYQALLLGGAG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=1014605 ABV408_RS07645 WP_353981836.1 1672538..1673398(-) (pilD) [Salinicola endophyticus strain HNIBRBA4755]
TTGTCCCAACTTTCCCCCTGGCTGCTGTGGCCCCTGGCATTCGTGCTCGGCGCCTGCCTGGGCAGCTTCATCAACGTGGT
GATCGTACGCCTGCCGGTAATGCTGATGCGGCGCTGGCGCGCCGAGGCGCGCGCCGCGCTCGAGCTGGAAGCCGAGCCGC
TGCCACGCTATGACCTGCTGCTGCCGCGCTCGCACTGCCCCGCCTGTCGCCAGTTCATTGCCTGGCACGACAACCTGCCG
CTGATCGGCTGGCTCAAGCGCCGCGGCCGCTGTGCCACCTGCGCGGCACCGATCAGCCCGCAGTACCCGCTGGTCGAGCT
GCTGGCGGGCGGCGTGAGCCTGGCCGCGCTGGCGATCCACGGCGCCAGCATCGAGACGCTGTGGCTGGTCGGCGCCTGCC
TGGTGCTGCTGGCGCTGGCGGTGATCGACTGGCGCACCCAACTGCTGCCGGATGCGCTCACCCTGCCACTGCTATGGGCC
GGCTTGCTCTACCAGTGGACTTACCACCCGCTGTGGCTCGGCAGCGCCGTGATCGGCGCGGCCGCCGGCTATCTGGTGCT
GTGGGCGGTGTATTGGCTGTTCAAGCTGACCACCGGCAAGGAGGGCATGGGCCATGGTGACTTCAAGCTGATGGCGGCGC
TGGGCGCCTGGCTGGGCTGGCAGAATCTGCCGCTGCTGCTGCTGCTCTCCGCCGGCGCCGGCACGCTGATCGGTATCGCG
CTGATCATCGGCCGCCGCCATGAGCGCGGCCAGCCGCTACCGTTCGGCCCGTTCATCGCCCTGGCCGGTTGGGTCGCGCT
GCTGGTGGGGGCGCCGCTGCAGGCCGGCTACCAGGCACTGCTGCTGGGAGGTGCAGGATGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(133-239)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(15-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio campbellii strain DS40M4

48.252

100

0.483
  pilD Vibrio cholerae strain A1552

50

93.706

0.469
  pilD Acinetobacter baumannii D1279779

47.17

92.657

0.437
  pilD Acinetobacter nosocomialis M2

47.348

92.308

0.437
  pilD Neisseria gonorrhoeae MS11

44.195

93.357

0.413

Multiple sequence alignment