Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABNK30_RS04310 Genome accession   NZ_CP159509
Coordinates   954969..956228 (-) Length   419 a.a.
NCBI ID   WP_049403032.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain SM911     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 949969..961228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNK30_RS04280 - 950047..950517 (+) 471 WP_005410805.1 hypothetical protein -
  ABNK30_RS04285 - 950526..951203 (+) 678 WP_005410804.1 response regulator transcription factor -
  ABNK30_RS04290 - 951208..952536 (+) 1329 WP_005410803.1 HAMP domain-containing sensor histidine kinase -
  ABNK30_RS04295 - 953030..953416 (+) 387 WP_005410802.1 hypothetical protein -
  ABNK30_RS04300 coaE 953475..954086 (-) 612 WP_049403033.1 dephospho-CoA kinase -
  ABNK30_RS04305 - 954098..954961 (-) 864 WP_005410800.1 A24 family peptidase -
  ABNK30_RS04310 pilC 954969..956228 (-) 1260 WP_049403032.1 type II secretion system F family protein Machinery gene
  ABNK30_RS04315 - 956581..957003 (+) 423 WP_049403031.1 pilin -
  ABNK30_RS04320 - 957114..957563 (+) 450 WP_275043866.1 pilin -
  ABNK30_RS04325 pilB 957786..959519 (+) 1734 WP_049403029.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABNK30_RS04330 pilR 959630..961003 (-) 1374 WP_111108606.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45918.33 Da        Isoelectric Point: 10.1071

>NTDB_id=1013924 ABNK30_RS04310 WP_049403032.1 954969..956228(-) (pilC) [Stenotrophomonas maltophilia strain SM911]
MSVSRSAIKKEPVARATMELQPFVWEGTDKRGVKMKGEQLAKNANLLRAELRRQGINPGQVKPKPKPLFGASGSPVKPKD
IAFFSRQMATMMKSGVPIVSALDIIASGHKNPRMKKLVDTIRTDIEGGSSMYEAVSKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKALFYPIMVVVVAMLVSGIMLVFVVPQFEDVFKSFGAELPAFTQMVVNLSRFMVSWWWL
IFLIVVGSAVGAIMAYKRSPKMQHAMDRFVLKVPVIGQIMHNSAIARFSRTTAVTFKAGVPLVEALGIVAGATGNTVYEE
AVLRMRDDVSVGYPVNMSMKQTNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNSVDALSSLLEPMIMVFIGTIV
GGMVIAMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1013924 ABNK30_RS04310 WP_049403032.1 954969..956228(-) (pilC) [Stenotrophomonas maltophilia strain SM911]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAAGAGCCGGTGGCGCGCGCCACCATGGAGCTGCAGCCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGCGTGAAGATGAAGGGCGAGCAGCTGGCCAAGAACGCCAACCTGCTGCGCGCCGAGCTACGCCGCC
AGGGCATCAACCCGGGCCAGGTCAAGCCCAAGCCGAAGCCGCTGTTCGGCGCCTCCGGCAGCCCGGTCAAGCCGAAGGAC
ATCGCCTTCTTCAGCCGGCAGATGGCCACGATGATGAAATCCGGCGTGCCGATCGTGTCGGCGCTGGACATCATCGCCAG
CGGGCACAAGAACCCGCGGATGAAGAAGCTGGTGGACACCATCCGCACCGACATCGAGGGCGGCTCCTCGATGTACGAGG
CGGTCAGCAAGCACCCGGTGCAGTTCGACGAGCTGTACCGCAACCTGGTGCGGGCCGGCGAAGGCGCCGGCGTGCTGGAA
ACCGTGCTGGACACGGTGGCCACCTACAAGGAAAACATCGAAGCGCTGAAGGGCAAGATCAAGAAGGCGCTGTTCTACCC
GATCATGGTGGTGGTGGTGGCGATGCTGGTCAGCGGCATCATGCTGGTGTTCGTGGTGCCGCAGTTCGAGGACGTGTTCA
AGAGCTTCGGCGCCGAGCTGCCCGCCTTCACCCAGATGGTGGTGAATCTCTCGCGGTTCATGGTGTCGTGGTGGTGGCTG
ATATTCCTGATCGTGGTGGGCTCCGCTGTCGGTGCCATCATGGCCTACAAGCGCTCGCCGAAGATGCAGCACGCGATGGA
CCGGTTCGTGCTGAAGGTGCCGGTGATCGGGCAGATCATGCACAACAGTGCCATCGCCCGCTTCTCGCGCACCACCGCGG
TCACCTTCAAGGCCGGCGTGCCGCTGGTGGAGGCGCTGGGCATCGTGGCCGGCGCCACCGGCAACACCGTGTACGAAGAG
GCGGTGCTGCGCATGCGCGACGACGTCTCGGTGGGTTACCCGGTGAACATGTCGATGAAGCAGACCAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGCGAAGAGGCCGGTGCGCTGGACGCCATGCTGTTCAAGGTGGCCGAGTACTATG
AGCAGGAGGTCAACAATTCGGTGGATGCCCTGAGCAGCCTGCTGGAACCGATGATCATGGTGTTCATTGGTACCATTGTG
GGCGGCATGGTGATTGCCATGTACCTTCCCATCTTCAAACTCGGCGCCGTCGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.798

94.511

0.518
  pilC Legionella pneumophila strain ERS1305867

52.632

95.227

0.501
  pilC Acinetobacter baylyi ADP1

50.739

96.897

0.492
  pilC Acinetobacter baumannii D1279779

49.631

97.136

0.482
  pilG Neisseria gonorrhoeae MS11

44.221

94.988

0.42
  pilG Neisseria meningitidis 44/76-A

43.86

95.227

0.418
  pilC Vibrio cholerae strain A1552

41.872

96.897

0.406
  pilC Vibrio campbellii strain DS40M4

41.895

95.704

0.401
  pilC Thermus thermophilus HB27

37.562

95.943

0.36

Multiple sequence alignment