Detailed information NTG1013925

Bioinformatically predicted

Overview

• Name: pilB
• Type: Machinery gene
• Locus tag: ABNK30_RS04325
• Genome accession: NZ_CP159509
• Coordinates: 957786..959519 (+)
• Length: 577 a.a.
• NCBI ID: WP_049403029.1
• Uniprot ID: -
• Organism: Stenotrophomonas maltophilia strain SM911
• Function: power the assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 952786..964519

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABNK30_RS04295	-	953030..953416 (+)	387	WP_005410802.1	hypothetical protein	-
ABNK30_RS04300	coaE	953475..954086 (-)	612	WP_049403033.1	dephospho-CoA kinase	-
ABNK30_RS04305	-	954098..954961 (-)	864	WP_005410800.1	A24 family peptidase	-
ABNK30_RS04310	pilC	954969..956228 (-)	1260	WP_049403032.1	type II secretion system F family protein	Machinery gene
ABNK30_RS04315	-	956581..957003 (+)	423	WP_049403031.1	pilin	-
ABNK30_RS04320	-	957114..957563 (+)	450	WP_275043866.1	pilin	-
ABNK30_RS04325	pilB	957786..959519 (+)	1734	WP_049403029.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABNK30_RS04330	pilR	959630..961003 (-)	1374	WP_111108606.1	sigma-54 dependent transcriptional regulator	Regulator
ABNK30_RS04335	-	961064..962677 (-)	1614	WP_005414304.1	ATP-binding protein	-
ABNK30_RS04340	sucC	963035..964204 (+)	1170	WP_004154430.1	ADP-forming succinate--CoA ligase subunit beta	-

Sequence

Protein

• Length: 577 a.a.
• Molecular weight: 62390.35 Da
• Isoelectric Point: 6.0438

>NTDB_id=1013925 ABNK30_RS04325 WP_049403029.1 957786..959519(+) (pilB) [Stenotrophomonas maltophilia strain SM911]
MNAVTTANLVGITGLARRLVQDGALDEATARDAMAKAAAARQPLPTWFAQNKLVNASQLAAANAVEFGMPLFDVSTFDAS
QNAMSLVSEELLRKHNVLPLFKRGGKLFVGTSNPTHSLDEIKFHTNLVVEPILVDEDQIRRTLEQWHASHDTLGDALGGD
DDGMGNLDVAAGDEDLGATGGESGIDAKGDDTPVVKFVNKVLVDAIRKGASDIHFEPYEDDYRVRLRIDGLLKMVARAPV
KLNQRIAARLKVMAQLDIAEKRVPQDGRIKLNLSKTKQIDFRVSTLPTLFGEKVVLRILDGSAAKLGIDKLGYEPDQQKL
FLDAIHKPYGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNNKRGMTFAAALRSFLRQDPD
IIMVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCGNCKRRSSLPE
HALLAEGFTQAQLDAGIELYEAVGCDECTEGYKGRTGVYQVMPMTDEIATIVLAGGNALQIAEAAQQIGVNDLRQSALKK
AAAGITSLAEINRVTKD

Nucleotide

• Length: 1734 bp

>NTDB_id=1013925 ABNK30_RS04325 WP_049403029.1 957786..959519(+) (pilB) [Stenotrophomonas maltophilia strain SM911]
ATGAACGCTGTCACCACCGCCAATCTTGTCGGCATCACCGGCCTGGCCCGTCGCCTGGTGCAGGACGGGGCCCTGGACGA
GGCCACCGCCCGCGACGCCATGGCCAAGGCCGCCGCCGCGCGCCAGCCACTGCCGACGTGGTTCGCGCAGAACAAGCTGG
TCAATGCCTCGCAGCTGGCCGCCGCCAATGCGGTCGAGTTCGGCATGCCGCTGTTCGACGTGTCCACCTTCGACGCCAGC
CAGAACGCGATGAGCCTGGTCAGCGAGGAGCTGCTGCGCAAGCACAACGTGCTGCCGCTCTTCAAGCGCGGTGGCAAGCT
GTTCGTCGGCACCAGCAATCCGACCCACTCGCTGGACGAGATCAAGTTCCACACCAACCTGGTGGTCGAGCCGATCCTGG
TCGACGAGGACCAGATCCGGCGCACGCTGGAACAGTGGCACGCCAGCCATGACACCCTCGGCGATGCCCTGGGTGGTGAT
GACGATGGCATGGGCAACCTGGACGTGGCGGCCGGCGACGAGGATCTCGGCGCCACCGGCGGCGAGTCCGGCATCGATGC
CAAGGGTGACGACACCCCGGTGGTGAAGTTCGTCAACAAGGTGCTGGTCGATGCGATCCGCAAGGGCGCCTCGGACATCC
ACTTCGAGCCCTACGAAGACGATTACCGCGTGCGCCTGCGCATCGACGGCCTGCTGAAGATGGTCGCGCGCGCACCGGTG
AAGTTGAACCAGCGCATCGCCGCGCGCCTGAAGGTGATGGCACAGCTGGATATCGCCGAGAAGCGCGTCCCGCAGGACGG
CCGCATCAAGCTCAACCTGTCCAAGACCAAGCAGATCGACTTCCGCGTCAGCACGCTGCCGACCCTGTTCGGCGAGAAGG
TGGTGCTGCGTATCCTCGATGGCAGCGCGGCCAAGCTGGGCATCGACAAGCTGGGTTACGAGCCGGACCAGCAGAAGCTG
TTCCTGGATGCCATCCACAAGCCGTACGGCATGGTGCTGGTGACCGGCCCGACCGGTTCGGGCAAGACGGTGTCGCTGTA
TACCGCGCTGGGCATCCTCAATGACGAGACGCGCAACATCTCCACCGCCGAAGACCCGGTGGAAATCCGCCTGCCCGGCG
TCAACCAGGTACAGCAGAACAACAAGCGCGGCATGACCTTCGCCGCGGCGCTGCGCTCGTTCCTGCGACAGGACCCGGAC
ATCATCATGGTCGGCGAAATCCGCGACCTGGAAACGGCGGAGATCGCGATCAAGGCCGCGCAGACCGGCCACATGGTGCT
GTCCACGCTGCACACCAACGATGCGCCGCAGACCATCGCGCGCCTGATGAACATGGGTATCGCGCCGTACAACATCACCA
GCTCGGTGACGCTGGTGATCGCCCAGCGCCTGGCGCGCCGCCTGTGCGGCAACTGCAAGCGCCGGTCCAGCCTGCCCGAA
CATGCACTGCTGGCCGAAGGCTTCACCCAGGCGCAGCTGGATGCGGGCATCGAGCTGTACGAGGCCGTGGGCTGCGATGA
ATGCACCGAGGGCTACAAGGGCCGGACCGGCGTCTACCAGGTCATGCCGATGACCGATGAGATCGCCACCATCGTGCTGG
CCGGTGGCAATGCGCTGCAGATTGCCGAGGCGGCGCAGCAGATCGGCGTGAATGACCTGCGCCAGTCGGCCTTGAAGAAG
GCGGCGGCGGGCATCACCAGCCTGGCCGAGATCAACCGCGTCACCAAGGATTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (200-467)

• Type II secretion system (T2SS), protein E, N-terminal domain (MshEN) (50-150)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilB	Acinetobacter baumannii D1279779	55.077	100	0.555
pilB	Acinetobacter baylyi ADP1	54.53	100	0.553
pilB	Legionella pneumophila strain ERS1305867	52.105	98.787	0.515
pilF	Neisseria gonorrhoeae MS11	48.772	98.787	0.482
pilB	Vibrio cholerae strain A1552	48.936	97.747	0.478
pilB	Vibrio campbellii strain DS40M4	45.518	98.614	0.449
pilB	Vibrio parahaemolyticus RIMD 2210633	45.583	98.094	0.447