Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABVR74_RS07990 Genome accession   NZ_CP159484
Coordinates   1604535..1604969 (-) Length   144 a.a.
NCBI ID   WP_353891617.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain CBA3648     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1570969..1610122 1604535..1604969 within 0


Gene organization within MGE regions


Location: 1570969..1610122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVR74_RS07810 (ABVR74_07810) - 1570969..1571478 (-) 510 WP_003131379.1 hypothetical protein -
  ABVR74_RS07820 (ABVR74_07820) - 1573543..1574718 (-) 1176 WP_353891592.1 restriction endonuclease subunit S -
  ABVR74_RS07825 (ABVR74_07825) - 1574708..1576753 (-) 2046 WP_353891593.1 N-6 DNA methylase -
  ABVR74_RS07830 (ABVR74_07830) - 1576857..1577033 (-) 177 WP_353891594.1 hypothetical protein -
  ABVR74_RS07835 (ABVR74_07835) - 1577160..1577891 (-) 732 WP_353891595.1 peptidoglycan amidohydrolase family protein -
  ABVR74_RS07840 (ABVR74_07840) - 1577888..1578235 (-) 348 WP_353891596.1 hypothetical protein -
  ABVR74_RS07845 (ABVR74_07845) - 1578232..1578648 (-) 417 WP_227149993.1 phage holin family protein -
  ABVR74_RS07850 (ABVR74_07850) - 1578661..1578891 (-) 231 WP_227149994.1 hypothetical protein -
  ABVR74_RS07855 (ABVR74_07855) - 1578903..1582292 (-) 3390 WP_353891597.1 phage tail spike protein -
  ABVR74_RS07860 (ABVR74_07860) - 1582292..1583932 (-) 1641 WP_353891598.1 distal tail protein Dit -
  ABVR74_RS07865 (ABVR74_07865) - 1583929..1587900 (-) 3972 WP_353891599.1 phage tail tape measure protein -
  ABVR74_RS07870 (ABVR74_07870) - 1588010..1588807 (-) 798 WP_227149998.1 FxLYD domain-containing protein -
  ABVR74_RS07875 (ABVR74_07875) - 1589111..1589416 (-) 306 WP_278216411.1 hypothetical protein -
  ABVR74_RS07880 (ABVR74_07880) - 1589482..1590063 (-) 582 WP_353891600.1 major tail protein -
  ABVR74_RS07885 (ABVR74_07885) - 1590078..1590467 (-) 390 WP_353891601.1 hypothetical protein -
  ABVR74_RS07890 (ABVR74_07890) - 1590464..1590868 (-) 405 WP_353891602.1 HK97 gp10 family phage protein -
  ABVR74_RS07895 (ABVR74_07895) - 1590861..1591247 (-) 387 WP_353891603.1 phage head-tail adapter protein -
  ABVR74_RS07900 (ABVR74_07900) - 1591213..1591545 (-) 333 WP_058210171.1 hypothetical protein -
  ABVR74_RS07905 (ABVR74_07905) - 1591563..1591820 (-) 258 WP_353891604.1 hypothetical protein -
  ABVR74_RS07910 (ABVR74_07910) - 1591881..1593014 (-) 1134 WP_353891605.1 phage major capsid protein -
  ABVR74_RS07915 (ABVR74_07915) - 1593014..1593799 (-) 786 WP_353891606.1 head maturation protease, ClpP-related -
  ABVR74_RS07920 (ABVR74_07920) - 1593786..1594979 (-) 1194 WP_353891607.1 hypothetical protein -
  ABVR74_RS07925 (ABVR74_07925) - 1595171..1596910 (-) 1740 WP_353891608.1 terminase large subunit -
  ABVR74_RS07930 (ABVR74_07930) - 1596907..1597500 (-) 594 WP_353891609.1 helix-turn-helix transcriptional regulator -
  ABVR74_RS07935 (ABVR74_07935) - 1597642..1597941 (-) 300 WP_039116107.1 HNH endonuclease -
  ABVR74_RS07940 (ABVR74_07940) - 1597990..1598289 (-) 300 WP_039116109.1 hypothetical protein -
  ABVR74_RS07945 (ABVR74_07945) - 1598483..1599280 (-) 798 WP_353891610.1 hypothetical protein -
  ABVR74_RS07950 (ABVR74_07950) - 1599284..1599835 (-) 552 WP_353891611.1 LemA family protein -
  ABVR74_RS07955 (ABVR74_07955) - 1599953..1600345 (-) 393 WP_353891612.1 RusA family crossover junction endodeoxyribonuclease -
  ABVR74_RS07960 (ABVR74_07960) - 1600470..1601531 (-) 1062 WP_064973650.1 DNA methyltransferase -
  ABVR74_RS07965 (ABVR74_07965) - 1601747..1602382 (-) 636 WP_353891613.1 hypothetical protein -
  ABVR74_RS07970 (ABVR74_07970) - 1602330..1602692 (-) 363 WP_353891614.1 hypothetical protein -
  ABVR74_RS07975 (ABVR74_07975) - 1602820..1603074 (-) 255 WP_259683574.1 DUF1031 family protein -
  ABVR74_RS07980 (ABVR74_07980) - 1603289..1603681 (-) 393 WP_353891615.1 hypothetical protein -
  ABVR74_RS07985 (ABVR74_07985) - 1603685..1604524 (-) 840 WP_353891616.1 DnaD domain protein -
  ABVR74_RS07990 (ABVR74_07990) ssb 1604535..1604969 (-) 435 WP_353891617.1 single-stranded DNA-binding protein Machinery gene
  ABVR74_RS07995 (ABVR74_07995) - 1604959..1605180 (-) 222 WP_353891618.1 hypothetical protein -
  ABVR74_RS08000 (ABVR74_08000) - 1605177..1605341 (-) 165 WP_336271810.1 hypothetical protein -
  ABVR74_RS08005 (ABVR74_08005) - 1605429..1605680 (-) 252 WP_033900176.1 hypothetical protein -
  ABVR74_RS08010 (ABVR74_08010) - 1605820..1606536 (-) 717 WP_353891619.1 ORF6C domain-containing protein -
  ABVR74_RS08015 (ABVR74_08015) - 1606551..1606781 (-) 231 WP_353891620.1 helix-turn-helix transcriptional regulator -
  ABVR74_RS08020 (ABVR74_08020) - 1606951..1607487 (+) 537 WP_353891621.1 helix-turn-helix domain-containing protein -
  ABVR74_RS08025 (ABVR74_08025) - 1607498..1608085 (+) 588 WP_353891622.1 hypothetical protein -
  ABVR74_RS08030 (ABVR74_08030) - 1608143..1608862 (+) 720 WP_353891623.1 hypothetical protein -
  ABVR74_RS08035 (ABVR74_08035) - 1608992..1610122 (+) 1131 WP_313791723.1 site-specific integrase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16245.94 Da        Isoelectric Point: 4.9268

>NTDB_id=1013833 ABVR74_RS07990 WP_353891617.1 1604535..1604969(-) (ssb) [Lactococcus lactis subsp. lactis strain CBA3648]
MINNVVIVGRITRDPELRYTPQQNQAVTTFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGTLIGLTGKIQT
RNYENQQGQRVYITEVAADSFQMLESKGGAKQNEESQNNTAPNFARDNSHDIPGTEISDDDLPF

Nucleotide


Download         Length: 435 bp        

>NTDB_id=1013833 ABVR74_RS07990 WP_353891617.1 1604535..1604969(-) (ssb) [Lactococcus lactis subsp. lactis strain CBA3648]
ATGATAAATAACGTTGTAATAGTTGGACGTATTACACGAGATCCAGAATTAAGATATACACCACAACAAAATCAGGCAGT
TACAACTTTCAGTTTGGCTGTTAATCGCCAATTTAAGAACGCAAATGGAGAACGTGAGGCAGACTTCATAAATTGCGTTA
TCTGGCGTCAGCAAGCCGAAAATTTAGCAAATTGGGCTAAAAAAGGAACTTTGATTGGATTAACTGGTAAAATCCAAACA
CGAAACTATGAAAATCAGCAAGGGCAACGAGTTTACATCACAGAAGTAGCTGCTGACAGTTTCCAAATGCTGGAAAGCAA
AGGGGGAGCAAAACAAAATGAAGAGTCACAAAATAATACAGCTCCGAATTTTGCGCGTGACAATTCCCATGATATTCCAG
GTACAGAAATTAGCGATGATGATTTGCCATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

54.335

100

0.653
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.124

100

0.632
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.75

100

0.438
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.206

74.306

0.403
  ssbB/cilA Streptococcus mitis NCTC 12261

40.278

100

0.403
  ssbB/cilA Streptococcus pneumoniae D39

40.278

100

0.403
  ssbB/cilA Streptococcus pneumoniae R6

40.278

100

0.403
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.278

100

0.403
  ssbB/cilA Streptococcus pneumoniae Rx1

40.278

100

0.403
  ssbB/cilA Streptococcus mitis SK321

39.583

100

0.396
  ssbA Streptococcus mutans UA159

38.889

100

0.389

Multiple sequence alignment