Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ABVR74_RS04080 | Genome accession | NZ_CP159484 |
| Coordinates | 786965..787423 (+) | Length | 152 a.a. |
| NCBI ID | WP_353891817.1 | Uniprot ID | - |
| Organism | Lactococcus lactis subsp. lactis strain CBA3648 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 777216..799626 | 786965..787423 | within | 0 |
Gene organization within MGE regions
Location: 777216..799626
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABVR74_RS03995 (ABVR74_03995) | - | 777216..778046 (-) | 831 | WP_353891804.1 | site-specific integrase | - |
| ABVR74_RS04000 (ABVR74_04000) | - | 778053..778166 (-) | 114 | Protein_758 | site-specific integrase | - |
| ABVR74_RS04005 (ABVR74_04005) | - | 778464..779270 (-) | 807 | WP_353891805.1 | Ltp family lipoprotein | - |
| ABVR74_RS04010 (ABVR74_04010) | - | 779377..780435 (-) | 1059 | WP_278213049.1 | type I restriction endonuclease | - |
| ABVR74_RS04015 (ABVR74_04015) | - | 780525..781112 (-) | 588 | WP_353891806.1 | hypothetical protein | - |
| ABVR74_RS04020 (ABVR74_04020) | - | 781123..781674 (-) | 552 | WP_353891807.1 | helix-turn-helix domain-containing protein | - |
| ABVR74_RS04025 (ABVR74_04025) | - | 782089..782784 (-) | 696 | WP_270331507.1 | DUF4145 domain-containing protein | - |
| ABVR74_RS04030 (ABVR74_04030) | - | 782940..783179 (+) | 240 | WP_353891808.1 | helix-turn-helix transcriptional regulator | - |
| ABVR74_RS04035 (ABVR74_04035) | - | 783191..783427 (+) | 237 | WP_353891809.1 | hypothetical protein | - |
| ABVR74_RS04040 (ABVR74_04040) | - | 783653..784477 (+) | 825 | WP_353891810.1 | phage antirepressor | - |
| ABVR74_RS04045 (ABVR74_04045) | - | 784491..784829 (+) | 339 | WP_353891811.1 | hypothetical protein | - |
| ABVR74_RS04050 (ABVR74_04050) | - | 784910..785047 (+) | 138 | WP_353891812.1 | hypothetical protein | - |
| ABVR74_RS04055 (ABVR74_04055) | - | 785025..785252 (-) | 228 | WP_353891813.1 | hypothetical protein | - |
| ABVR74_RS04060 (ABVR74_04060) | - | 785399..785599 (+) | 201 | WP_017865014.1 | helix-turn-helix transcriptional regulator | - |
| ABVR74_RS04065 (ABVR74_04065) | - | 785599..785814 (+) | 216 | WP_353891814.1 | DUF1408 domain-containing protein | - |
| ABVR74_RS04070 (ABVR74_04070) | - | 785935..786333 (+) | 399 | WP_353891815.1 | hypothetical protein | - |
| ABVR74_RS04075 (ABVR74_04075) | - | 786342..786965 (+) | 624 | WP_353891816.1 | DUF1071 domain-containing protein | - |
| ABVR74_RS04080 (ABVR74_04080) | ssb | 786965..787423 (+) | 459 | WP_353891817.1 | single-stranded DNA-binding protein | Machinery gene |
| ABVR74_RS04085 (ABVR74_04085) | - | 787565..788398 (+) | 834 | WP_353891818.1 | DnaD domain protein | - |
| ABVR74_RS04090 (ABVR74_04090) | - | 788422..788922 (+) | 501 | WP_353891944.1 | hypothetical protein | - |
| ABVR74_RS04095 (ABVR74_04095) | - | 789699..789902 (+) | 204 | WP_353891819.1 | hypothetical protein | - |
| ABVR74_RS04100 (ABVR74_04100) | - | 789979..790278 (+) | 300 | WP_109990807.1 | hypothetical protein | - |
| ABVR74_RS04105 (ABVR74_04105) | - | 790390..790746 (+) | 357 | WP_353891820.1 | peptidoglycan endopeptidase | - |
| ABVR74_RS04110 (ABVR74_04110) | - | 790850..791209 (+) | 360 | WP_353891821.1 | YxeA family protein | - |
| ABVR74_RS04115 (ABVR74_04115) | arsC | 791300..791704 (+) | 405 | WP_251901019.1 | arsenate reductase (thioredoxin) | - |
| ABVR74_RS04120 (ABVR74_04120) | - | 791839..791988 (+) | 150 | WP_161935067.1 | hypothetical protein | - |
| ABVR74_RS04125 (ABVR74_04125) | - | 792105..792608 (+) | 504 | WP_058221320.1 | type II toxin-antitoxin system antitoxin SocA domain-containing protein | - |
| ABVR74_RS04130 (ABVR74_04130) | - | 792605..793015 (+) | 411 | WP_353891822.1 | hypothetical protein | - |
| ABVR74_RS04140 (ABVR74_04140) | - | 794180..794551 (-) | 372 | WP_270220116.1 | aldo/keto reductase | - |
| ABVR74_RS04145 (ABVR74_04145) | - | 796189..797079 (-) | 891 | WP_023188697.1 | hypothetical protein | - |
| ABVR74_RS04150 (ABVR74_04150) | - | 797766..798602 (+) | 837 | WP_353891823.1 | metallophosphoesterase | - |
| ABVR74_RS04155 (ABVR74_04155) | - | 798715..799626 (+) | 912 | WP_058223280.1 | CHAP domain-containing protein | - |
Sequence
Protein
Download Length: 152 a.a. Molecular weight: 16997.02 Da Isoelectric Point: 7.9593
>NTDB_id=1013822 ABVR74_RS04080 WP_353891817.1 786965..787423(+) (ssb) [Lactococcus lactis subsp. lactis strain CBA3648]
MINNVVLVGRLTRDPELRYTPQNQAVGTFGLAVNRQFKNANGEREADFINCVIWRQQAENLANFAKKGSLIGITGRIQTR
NYENQQGQKVYVTEVVADNFQMLESNKAQGEQSNKPQAQNKKPQAPDPFKTPGADPFSGGKPMEINDEDLPF
MINNVVLVGRLTRDPELRYTPQNQAVGTFGLAVNRQFKNANGEREADFINCVIWRQQAENLANFAKKGSLIGITGRIQTR
NYENQQGQKVYVTEVVADNFQMLESNKAQGEQSNKPQAQNKKPQAPDPFKTPGADPFSGGKPMEINDEDLPF
Nucleotide
Download Length: 459 bp
>NTDB_id=1013822 ABVR74_RS04080 WP_353891817.1 786965..787423(+) (ssb) [Lactococcus lactis subsp. lactis strain CBA3648]
ATGATTAACAACGTTGTATTAGTGGGTCGCCTGACTCGTGACCCTGAACTTAGATATACACCGCAGAACCAAGCAGTAGG
AACATTTGGATTAGCTGTCAATCGTCAGTTTAAGAATGCCAATGGAGAGCGAGAAGCTGACTTCATTAATTGTGTTATTT
GGCGTCAACAAGCAGAAAATTTAGCAAATTTTGCAAAAAAAGGTTCTTTGATTGGAATAACCGGACGGATTCAAACACGG
AACTACGAGAACCAACAAGGACAAAAAGTTTATGTTACTGAAGTTGTTGCAGATAATTTCCAAATGCTTGAAAGCAATAA
AGCACAGGGCGAGCAATCAAATAAACCGCAAGCTCAAAATAAAAAGCCACAGGCACCAGACCCTTTTAAAACTCCTGGTG
CTGATCCATTCTCAGGCGGAAAACCGATGGAAATCAACGATGAAGACCTACCATTTTAA
ATGATTAACAACGTTGTATTAGTGGGTCGCCTGACTCGTGACCCTGAACTTAGATATACACCGCAGAACCAAGCAGTAGG
AACATTTGGATTAGCTGTCAATCGTCAGTTTAAGAATGCCAATGGAGAGCGAGAAGCTGACTTCATTAATTGTGTTATTT
GGCGTCAACAAGCAGAAAATTTAGCAAATTTTGCAAAAAAAGGTTCTTTGATTGGAATAACCGGACGGATTCAAACACGG
AACTACGAGAACCAACAAGGACAAAAAGTTTATGTTACTGAAGTTGTTGCAGATAATTTCCAAATGCTTGAAAGCAATAA
AGCACAGGGCGAGCAATCAAATAAACCGCAAGCTCAAAATAAAAAGCCACAGGCACCAGACCCTTTTAAAACTCCTGGTG
CTGATCCATTCTCAGGCGGAAAACCGATGGAAATCAACGATGAAGACCTACCATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
57.895 |
100 |
0.651 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
54.651 |
100 |
0.618 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.615 |
68.421 |
0.408 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
50 |
75 |
0.375 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
49.123 |
75 |
0.368 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
48.246 |
75 |
0.362 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
48.246 |
75 |
0.362 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
48.246 |
75 |
0.362 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
48.246 |
75 |
0.362 |
| ssbB/cilA | Streptococcus mitis SK321 |
48.246 |
75 |
0.362 |
| ssb | Neisseria gonorrhoeae MS11 |
31.977 |
100 |
0.362 |