Detailed information NTG1013532

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: JMV10_RS12955
• Genome accession: NZ_LR883965
• Coordinates: 2736789..2737814 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli isolate 2016-17-550
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2731789..2742814

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JMV10_RS12945 (QREC_QR550_02551)	rpmE	2734020..2734232 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
JMV10_RS12950 (QREC_QR550_02552)	priA	2734435..2736633 (+)	2199	WP_001348093.1	primosomal protein N'	Machinery gene
JMV10_RS12955 (QREC_QR550_02553)	cytR	2736789..2737814 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
JMV10_RS12960 (QREC_QR550_02554)	ftsN	2737906..2738865 (+)	960	WP_000068834.1	cell division protein FtsN	-
JMV10_RS12965 (QREC_QR550_02555)	hslV	2738958..2739488 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
JMV10_RS12970 (QREC_QR550_02556)	hslU	2739498..2740829 (+)	1332	WP_001293343.1	HslU--HslV peptidase ATPase subunit	-
JMV10_RS12975 (QREC_QR550_02557)	menA	2740896..2741822 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
JMV10_RS12980 (QREC_QR550_02558)	rraA	2741915..2742400 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
JMV10_RS12985 (QREC_QR550_02559)	zapB	2742485..2742730 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=1013532 JMV10_RS12955 WP_000644904.1 2736789..2737814(+) (cytR) [Escherichia coli isolate 2016-17-550]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=1013532 JMV10_RS12955 WP_000644904.1 2736789..2737814(+) (cytR) [Escherichia coli isolate 2016-17-550]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTCGCACCGGAACTGGAG
CTACCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATCTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628