Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ABVJ71_RS13290 Genome accession   NZ_CP159358
Coordinates   2588309..2588743 (+) Length   144 a.a.
NCBI ID   WP_353854436.1    Uniprot ID   -
Organism   Bacillus sp. Bos-x628     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2583309..2593743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVJ71_RS13270 degU 2584466..2585155 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  ABVJ71_RS13275 - 2585368..2586210 (+) 843 WP_353854434.1 DegV family protein -
  ABVJ71_RS13280 comFA 2586582..2587724 (+) 1143 WP_353854435.1 DEAD/DEAH box helicase family protein Machinery gene
  ABVJ71_RS13285 - 2587789..2588076 (+) 288 WP_353856671.1 late competence development ComFB family protein -
  ABVJ71_RS13290 comFC 2588309..2588743 (+) 435 WP_353854436.1 phosphoribosyltransferase family protein Machinery gene
  ABVJ71_RS13295 - 2588800..2589219 (+) 420 WP_353854437.1 TIGR03826 family flagellar region protein -
  ABVJ71_RS13300 flgM 2589299..2589562 (+) 264 WP_353854438.1 flagellar biosynthesis anti-sigma factor FlgM -
  ABVJ71_RS13305 - 2589580..2590062 (+) 483 WP_353854439.1 flagellar protein FlgN -
  ABVJ71_RS13310 flgK 2590078..2591598 (+) 1521 WP_353854440.1 flagellar hook-associated protein FlgK -
  ABVJ71_RS13315 flgL 2591608..2592519 (+) 912 WP_353854441.1 flagellar hook-associated protein FlgL -
  ABVJ71_RS13320 - 2592566..2593126 (+) 561 WP_353854442.1 DUF6470 family protein -
  ABVJ71_RS13325 fliW 2593172..2593606 (+) 435 WP_353854443.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16365.02 Da        Isoelectric Point: 10.8299

>NTDB_id=1013398 ABVJ71_RS13290 WP_353854436.1 2588309..2588743(+) (comFC) [Bacillus sp. Bos-x628]
MKDILARFKFRGDTALAELFKQDVQAAFKRSFSMKDHLLIPIPLSKERLKERGFNQSVVLASLLGTPMTQPLVKSHQSKQ
SKKSKNERLYQTGLFRLEQPDTIVRRNVILIDDIYTTGATIYDAARILKDSGAKSVSSFTFIRS

Nucleotide


Download         Length: 435 bp        

>NTDB_id=1013398 ABVJ71_RS13290 WP_353854436.1 2588309..2588743(+) (comFC) [Bacillus sp. Bos-x628]
ATGAAAGACATTCTGGCTCGTTTCAAATTTCGAGGTGATACTGCTTTAGCTGAGCTGTTTAAGCAAGATGTTCAAGCAGC
ATTTAAGCGCTCGTTTTCAATGAAAGACCATTTACTAATTCCAATCCCTTTAAGTAAAGAGAGATTAAAGGAAAGAGGAT
TCAATCAATCTGTTGTGCTGGCTTCCTTACTTGGTACGCCTATGACTCAGCCACTCGTTAAGAGTCATCAAAGTAAGCAG
TCTAAGAAGAGTAAGAATGAACGTTTATATCAAACTGGGTTATTTCGTTTGGAGCAACCGGATACGATAGTTAGAAGGAA
TGTTATATTAATTGATGACATCTATACAACGGGTGCTACAATCTATGATGCGGCAAGAATTTTAAAAGATTCAGGTGCGA
AAAGTGTTTCCTCTTTTACGTTTATTCGCAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(54-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

50.345

100

0.507
  comFC/cflB Streptococcus mitis NCTC 12261

38.462

99.306

0.382
  comFC Lactococcus lactis subsp. cremoris KW2

38.462

99.306

0.382
  comFC/cflB Streptococcus mitis SK321

37.762

99.306

0.375
  comFC/cflB Streptococcus pneumoniae D39

37.063

99.306

0.368
  comFC/cflB Streptococcus pneumoniae Rx1

37.063

99.306

0.368
  comFC/cflB Streptococcus pneumoniae R6

37.063

99.306

0.368
  comFC/cflB Streptococcus pneumoniae TIGR4

37.063

99.306

0.368
  comF Acinetobacter baumannii D1279779

34.899

100

0.361

Multiple sequence alignment