Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ABVJ71_RS13270 Genome accession   NZ_CP159358
Coordinates   2584466..2585155 (+) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus sp. Bos-x628     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2579466..2590155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVJ71_RS13250 - 2580159..2581226 (+) 1068 WP_353854430.1 MraY family glycosyltransferase -
  ABVJ71_RS13255 - 2581263..2582351 (-) 1089 WP_353854431.1 LCP family protein -
  ABVJ71_RS13260 - 2582336..2583004 (-) 669 WP_353854432.1 YigZ family protein -
  ABVJ71_RS13265 degS 2583226..2584401 (+) 1176 WP_353854433.1 sensor histidine kinase Regulator
  ABVJ71_RS13270 degU 2584466..2585155 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  ABVJ71_RS13275 - 2585368..2586210 (+) 843 WP_353854434.1 DegV family protein -
  ABVJ71_RS13280 comFA 2586582..2587724 (+) 1143 WP_353854435.1 DEAD/DEAH box helicase family protein Machinery gene
  ABVJ71_RS13285 - 2587789..2588076 (+) 288 WP_353856671.1 late competence development ComFB family protein -
  ABVJ71_RS13290 comFC 2588309..2588743 (+) 435 WP_353854436.1 phosphoribosyltransferase family protein Machinery gene
  ABVJ71_RS13295 - 2588800..2589219 (+) 420 WP_353854437.1 TIGR03826 family flagellar region protein -
  ABVJ71_RS13300 flgM 2589299..2589562 (+) 264 WP_353854438.1 flagellar biosynthesis anti-sigma factor FlgM -
  ABVJ71_RS13305 - 2589580..2590062 (+) 483 WP_353854439.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=1013396 ABVJ71_RS13270 WP_008348273.1 2584466..2585155(+) (degU) [Bacillus sp. Bos-x628]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1013396 ABVJ71_RS13270 WP_008348273.1 2584466..2585155(+) (degU) [Bacillus sp. Bos-x628]
GTGACTAAAGTAAATATTGTAATTATCGATGATCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAGCATTATCATCCGGATGTAGTCA
TTATGGACATTAATATGCCGAATGTAAATGGAGTAGAGGCAACAAAGCAGCTAGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTAACGCATGCATTAAAAACAGGGGCAAGAGGCTACCTGTTAAAAGA
AATGGATGCAGATACACTCATTGAAGCTGTTAAAGTAGTAGCTGACGGAGGTTCTTATTTACATCCGAAAGTAACTCATA
ATCTAGTAAATGAATTCCGGCGCTTGGCAACTAGTGGTGTTTCCGCACATCCTCAGCATGAGGTATATCCGGAGATTCGT
AGACCATTGCACATCTTAACAAGACGTGAATGTGAAGTACTCCAAATGTTAGCTGATGGTAAGAGCAATAGAGGAATCGG
TGAATCGCTCTTTATTAGTGAGAAAACAGTGAAAAATCACGTGAGTAACATTTTACAAAAGATGAATGTAAATGACCGTA
CACAAGCTGTTGTAGTGGCTATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment