Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ABVJ71_RS13280 Genome accession   NZ_CP159358
Coordinates   2586582..2587724 (+) Length   380 a.a.
NCBI ID   WP_353854435.1    Uniprot ID   -
Organism   Bacillus sp. Bos-x628     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2581582..2592724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVJ71_RS13260 - 2582336..2583004 (-) 669 WP_353854432.1 YigZ family protein -
  ABVJ71_RS13265 degS 2583226..2584401 (+) 1176 WP_353854433.1 sensor histidine kinase Regulator
  ABVJ71_RS13270 degU 2584466..2585155 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  ABVJ71_RS13275 - 2585368..2586210 (+) 843 WP_353854434.1 DegV family protein -
  ABVJ71_RS13280 comFA 2586582..2587724 (+) 1143 WP_353854435.1 DEAD/DEAH box helicase family protein Machinery gene
  ABVJ71_RS13285 - 2587789..2588076 (+) 288 WP_353856671.1 late competence development ComFB family protein -
  ABVJ71_RS13290 comFC 2588309..2588743 (+) 435 WP_353854436.1 phosphoribosyltransferase family protein Machinery gene
  ABVJ71_RS13295 - 2588800..2589219 (+) 420 WP_353854437.1 TIGR03826 family flagellar region protein -
  ABVJ71_RS13300 flgM 2589299..2589562 (+) 264 WP_353854438.1 flagellar biosynthesis anti-sigma factor FlgM -
  ABVJ71_RS13305 - 2589580..2590062 (+) 483 WP_353854439.1 flagellar protein FlgN -
  ABVJ71_RS13310 flgK 2590078..2591598 (+) 1521 WP_353854440.1 flagellar hook-associated protein FlgK -
  ABVJ71_RS13315 flgL 2591608..2592519 (+) 912 WP_353854441.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 380 a.a.        Molecular weight: 43165.51 Da        Isoelectric Point: 10.4283

>NTDB_id=1013397 ABVJ71_RS13280 WP_353854435.1 2586582..2587724(+) (comFA) [Bacillus sp. Bos-x628]
MMGKATECNALYEWVGPNCDETFQATLTWKGELSKGQKRASEKIIEAIKSRSDLLIWAVCGAGKTEVLFHGIEYALNIGR
RVCIATPRTDVVLELEPRIRKVFQGLNIAVLYGGSPERFQLAPLMITTTHQLLRYKDAFDVIIIDEVDAFPYSIDERLQF
AVKKAIRKKGVKIYLSATPSRNMKRDVSNGQLEAVKIPLRFHQQPLPVPSFKWIGQWKKKIKKKQLPSVVTKWIQHHIKE
KRRILLFVPSIAMMKEATIILRGLHLNVEGVSADDQDRKLKVKRFREYAYDVLVTTTILERGVTIQNVQVGVLGAESTIF
TESALVQIAGRAGRHPQYSKGDVSFFHFGVTRNMKQAKKHIVQMNQTAMSEFSEKKCGIN

Nucleotide


Download         Length: 1143 bp        

>NTDB_id=1013397 ABVJ71_RS13280 WP_353854435.1 2586582..2587724(+) (comFA) [Bacillus sp. Bos-x628]
ATGATGGGAAAAGCAACAGAATGCAATGCTCTTTATGAATGGGTTGGTCCGAATTGTGATGAAACATTCCAAGCAACATT
AACATGGAAAGGAGAGTTGTCTAAAGGGCAAAAGAGAGCATCTGAAAAGATCATTGAAGCAATAAAAAGCAGGTCTGACT
TATTAATTTGGGCTGTTTGTGGAGCAGGGAAAACAGAGGTTCTTTTTCATGGGATTGAGTATGCGTTAAATATAGGTCGG
CGAGTATGTATCGCAACGCCGAGAACAGATGTTGTACTTGAACTCGAACCGCGGATTAGAAAAGTATTTCAAGGATTGAA
TATCGCTGTGCTTTATGGTGGGAGTCCTGAGAGATTTCAATTAGCGCCACTTATGATCACTACAACACATCAGCTTCTTA
GATACAAGGATGCTTTTGATGTCATAATCATAGATGAAGTTGATGCATTTCCTTATTCAATAGATGAGCGTCTCCAGTTT
GCTGTAAAAAAGGCCATTCGTAAAAAAGGGGTCAAGATATATTTAAGTGCCACACCATCTCGAAACATGAAAAGAGATGT
TTCTAATGGACAATTAGAAGCTGTGAAGATCCCTCTTCGTTTCCATCAACAACCTTTGCCTGTCCCGTCTTTTAAATGGA
TAGGGCAGTGGAAGAAGAAGATAAAAAAGAAACAGTTGCCGTCTGTTGTGACGAAGTGGATACAACATCATATCAAAGAA
AAGAGAAGAATTTTACTTTTTGTTCCTTCGATCGCCATGATGAAGGAAGCAACGATTATTCTTCGAGGGCTTCACTTAAA
TGTAGAGGGTGTTTCTGCTGACGATCAAGATAGAAAATTAAAAGTCAAACGATTTAGAGAGTATGCATACGATGTACTTG
TTACAACGACTATTCTAGAAAGAGGTGTGACCATTCAAAATGTTCAGGTGGGTGTATTAGGTGCAGAATCTACTATTTTT
ACAGAAAGTGCACTTGTTCAAATTGCTGGAAGAGCAGGTAGGCATCCTCAATATTCTAAGGGAGATGTTTCTTTTTTTCA
TTTTGGTGTAACGAGAAATATGAAACAAGCTAAGAAGCATATTGTACAAATGAATCAAACGGCTATGAGCGAGTTTTCTG
AAAAAAAGTGTGGGATCAACTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(32-181)

Helicase conserved C-terminal domain (Helicase_C)

(236-335)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

58.152

96.842

0.563
  comFA Latilactobacillus sakei subsp. sakei 23K

40.27

97.368

0.392
  comFA/cflA Streptococcus mitis SK321

38.108

97.368

0.371
  comFA/cflA Streptococcus pneumoniae Rx1

37.027

97.368

0.361
  comFA/cflA Streptococcus pneumoniae D39

37.027

97.368

0.361
  comFA/cflA Streptococcus pneumoniae R6

37.027

97.368

0.361
  comFA/cflA Streptococcus mitis NCTC 12261

37.027

97.368

0.361

Multiple sequence alignment