Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABVN21_RS27385 Genome accession   NZ_CP159258
Coordinates   6040015..6041232 (-) Length   405 a.a.
NCBI ID   WP_339555079.1    Uniprot ID   A0AAU8E553
Organism   Pseudomonas sp. MYb327     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6035015..6046232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVN21_RS27350 (ABVN21_27350) - 6036096..6036269 (-) 174 WP_007996394.1 DUF3094 family protein -
  ABVN21_RS27355 (ABVN21_27355) - 6036321..6036848 (-) 528 WP_339555075.1 MOSC domain-containing protein -
  ABVN21_RS27360 (ABVN21_27360) - 6036845..6037471 (-) 627 WP_007970534.1 DUF1780 domain-containing protein -
  ABVN21_RS27365 (ABVN21_27365) - 6037609..6038298 (+) 690 WP_339555076.1 energy-coupling factor ABC transporter permease -
  ABVN21_RS27370 (ABVN21_27370) yacG 6038324..6038524 (-) 201 WP_060543361.1 DNA gyrase inhibitor YacG -
  ABVN21_RS27375 (ABVN21_27375) coaE 6038521..6039144 (-) 624 WP_339555077.1 dephospho-CoA kinase -
  ABVN21_RS27380 (ABVN21_27380) pilD 6039141..6040013 (-) 873 WP_339555078.1 A24 family peptidase Machinery gene
  ABVN21_RS27385 (ABVN21_27385) pilC 6040015..6041232 (-) 1218 WP_339555079.1 type II secretion system F family protein Machinery gene
  ABVN21_RS27390 (ABVN21_27390) - 6041235..6041537 (-) 303 Protein_5388 type IV-A pilus assembly ATPase PilB -
  ABVN21_RS27395 (ABVN21_27395) pilA 6041769..6042188 (+) 420 WP_339555080.1 pilin Machinery gene
  ABVN21_RS27400 (ABVN21_27400) - 6042496..6042849 (+) 354 WP_339555081.1 BON domain-containing protein -
  ABVN21_RS27405 (ABVN21_27405) - 6043063..6046017 (-) 2955 WP_339555082.1 DUF748 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44516.55 Da        Isoelectric Point: 9.8925

>NTDB_id=1012952 ABVN21_RS27385 WP_339555079.1 6040015..6041232(-) (pilC) [Pseudomonas sp. MYb327]
MAVKAAKISVYAWEGTDRKGTKITGELTGQNPALIKAQLRKQGINPGRVRKKTASLFNMGKRIKAQDIALFTRQMATMMR
AGVPLLQSFDIIGEGFDNPAMRKLVDEVKQEVAAGNSFAAALRKKPQHFDELYCNLVDAGEQAGALDTLLERVATYKEKS
ESLKAKIKKAMTYPLVVVFVAIIVTGILLVKVVPQFQSVFEGFGAELPAFTVMVIGLSRFMQDWWWLMLGVLTVGFFAVR
HAFKTSQVFRDRMDIWLLKLPLVGTLMYKSAVARYARTLSTTFAAGVPLVEALESVAGATGNIVFKRAVLRIKQDISTGM
QLNFAMRTCGIFPNMAIQMTAIGEESGALDDMLDKVAGFYEDEVDNMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1012952 ABVN21_RS27385 WP_339555079.1 6040015..6041232(-) (pilC) [Pseudomonas sp. MYb327]
ATGGCGGTCAAAGCAGCGAAAATCAGCGTGTACGCCTGGGAAGGCACAGACCGCAAAGGCACGAAAATCACCGGCGAATT
GACGGGCCAGAATCCCGCATTGATCAAAGCGCAATTGCGCAAGCAAGGCATCAACCCCGGCCGGGTTCGCAAGAAAACCG
CCTCGCTTTTCAACATGGGCAAACGCATCAAGGCCCAGGACATTGCACTGTTTACCCGGCAGATGGCGACCATGATGAGA
GCTGGCGTGCCGCTGTTGCAGTCGTTCGACATCATCGGCGAAGGCTTCGATAACCCGGCCATGCGCAAGCTGGTGGACGA
GGTGAAACAGGAAGTCGCGGCGGGGAATAGTTTCGCCGCGGCACTGCGTAAAAAACCGCAACACTTCGACGAGCTGTACT
GCAACCTGGTGGATGCCGGCGAGCAGGCGGGTGCGCTGGACACTCTGTTGGAACGGGTGGCCACCTACAAGGAAAAGAGC
GAAAGCCTAAAGGCCAAGATCAAGAAAGCCATGACCTACCCGCTGGTGGTGGTGTTCGTCGCAATCATCGTCACCGGGAT
TTTGCTGGTCAAAGTGGTGCCGCAATTCCAGTCGGTGTTCGAAGGGTTTGGTGCCGAATTGCCCGCCTTCACGGTGATGG
TGATTGGCCTGTCGCGGTTCATGCAGGATTGGTGGTGGTTGATGCTTGGCGTGCTGACCGTGGGGTTCTTCGCTGTGCGC
CACGCCTTCAAAACGTCGCAGGTTTTTCGCGACCGGATGGACATCTGGCTGCTGAAACTGCCGCTGGTGGGCACTTTGAT
GTACAAGTCCGCCGTGGCCCGTTATGCGCGAACGCTGTCGACCACCTTCGCCGCCGGCGTACCCTTGGTTGAAGCCCTGG
AATCAGTGGCGGGTGCCACCGGCAACATTGTGTTCAAGCGTGCGGTGCTGCGCATCAAGCAGGACATTTCGACAGGCATG
CAGCTGAACTTCGCCATGCGCACTTGCGGAATCTTTCCGAACATGGCGATTCAGATGACGGCCATTGGCGAAGAGTCAGG
CGCCCTCGACGATATGCTCGACAAGGTCGCGGGTTTCTACGAGGACGAGGTCGACAATATGGTTGATAACCTCACCAGCC
TGATGGAGCCGTTCATCATGGTAGTGCTGGGTGTTATTGTCGGCGGCCTGGTAGTTGCGATGTACCTGCCCATCTTCCAA
CTTGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

72.099

100

0.721
  pilC Acinetobacter baumannii D1279779

59.069

100

0.595
  pilC Acinetobacter baylyi ADP1

58.578

100

0.59
  pilC Legionella pneumophila strain ERS1305867

52.273

97.778

0.511
  pilC Vibrio cholerae strain A1552

42.105

98.519

0.415
  pilG Neisseria meningitidis 44/76-A

41.687

99.506

0.415
  pilG Neisseria gonorrhoeae MS11

41.687

99.506

0.415
  pilC Vibrio campbellii strain DS40M4

40.64

100

0.407
  pilC Thermus thermophilus HB27

37.905

99.012

0.375

Multiple sequence alignment