Detailed information NTG1012951

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABVN21_RS27380
• Genome accession: NZ_CP159258
• Coordinates: 6039141..6040013 (-)
• Length: 290 a.a.
• NCBI ID: WP_339555078.1
• Uniprot ID: A0AAU8E1U9
• Organism: Pseudomonas sp. MYb327
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6034141..6045013

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABVN21_RS27345 (ABVN21_27345)	-	6034737..6036035 (-)	1299	WP_339555074.1	NAD(P)/FAD-dependent oxidoreductase	-
ABVN21_RS27350 (ABVN21_27350)	-	6036096..6036269 (-)	174	WP_007996394.1	DUF3094 family protein	-
ABVN21_RS27355 (ABVN21_27355)	-	6036321..6036848 (-)	528	WP_339555075.1	MOSC domain-containing protein	-
ABVN21_RS27360 (ABVN21_27360)	-	6036845..6037471 (-)	627	WP_007970534.1	DUF1780 domain-containing protein	-
ABVN21_RS27365 (ABVN21_27365)	-	6037609..6038298 (+)	690	WP_339555076.1	energy-coupling factor ABC transporter permease	-
ABVN21_RS27370 (ABVN21_27370)	yacG	6038324..6038524 (-)	201	WP_060543361.1	DNA gyrase inhibitor YacG	-
ABVN21_RS27375 (ABVN21_27375)	coaE	6038521..6039144 (-)	624	WP_339555077.1	dephospho-CoA kinase	-
ABVN21_RS27380 (ABVN21_27380)	pilD	6039141..6040013 (-)	873	WP_339555078.1	A24 family peptidase	Machinery gene
ABVN21_RS27385 (ABVN21_27385)	pilC	6040015..6041232 (-)	1218	WP_339555079.1	type II secretion system F family protein	Machinery gene
ABVN21_RS27390 (ABVN21_27390)	-	6041235..6041537 (-)	303	Protein_5388	type IV-A pilus assembly ATPase PilB	-
ABVN21_RS27395 (ABVN21_27395)	pilA	6041769..6042188 (+)	420	WP_339555080.1	pilin	Machinery gene
ABVN21_RS27400 (ABVN21_27400)	-	6042496..6042849 (+)	354	WP_339555081.1	BON domain-containing protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32358.85 Da
• Isoelectric Point: 8.6000

>NTDB_id=1012951 ABVN21_RS27380 WP_339555078.1 6039141..6040013(-) (pilD) [Pseudomonas sp. MYb327]
MPLNEILAHYPLAFVVIAGMIGLLVGSFLNVLIWRLPKMLEREWRVQAHDILGLSSETPPPTFNLMLPHSQCPNCGHRIR
AWENIPILSFICLRGRCSACKAPIRKRYPLTELACGLLSAFIAWHFGFGWQACMALLLTWGLLAMSLIDAEHQLLPDVLV
LPLMWLGLIVNSLGLFVPLHEALWGAIAGYMALWSVFWLFKLITGKDGMGHGDFKLLAMFGAWGGWQILPLTILLSSLVG
AVVGVIYLRLRNAKTSTPIPFGPYLAIAGWIALLWGVQITDFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=1012951 ABVN21_RS27380 WP_339555078.1 6039141..6040013(-) (pilD) [Pseudomonas sp. MYb327]
ATGCCCTTGAACGAAATTCTCGCTCACTACCCGCTGGCCTTCGTCGTCATCGCCGGGATGATCGGCCTGCTGGTCGGCAG
CTTTCTCAACGTGCTGATCTGGCGTCTGCCGAAAATGCTCGAACGCGAGTGGCGCGTGCAGGCCCACGACATTCTCGGGC
TGTCCAGCGAAACGCCGCCGCCGACCTTCAACCTGATGCTGCCCCATTCCCAATGCCCAAACTGCGGTCATCGGATTCGT
GCTTGGGAAAACATTCCCATCCTCAGTTTTATATGCCTGCGTGGGCGCTGCTCTGCTTGCAAGGCGCCAATCAGAAAACG
CTACCCTCTGACCGAACTGGCCTGCGGCCTGTTATCGGCGTTCATTGCCTGGCATTTCGGTTTCGGCTGGCAAGCCTGCA
TGGCACTGCTACTGACCTGGGGCCTGCTGGCCATGAGCCTGATCGACGCAGAGCATCAACTGCTACCGGATGTACTGGTG
CTGCCGCTGATGTGGCTGGGGTTGATCGTCAACAGCCTCGGTTTGTTCGTGCCATTGCATGAAGCGCTGTGGGGCGCTAT
CGCCGGCTACATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGATCACCGGCAAGGACGGCATGGGCCATGGCGATT
TCAAGTTGCTGGCCATGTTTGGCGCCTGGGGCGGCTGGCAGATCTTGCCGCTGACCATCCTGTTGTCGTCCTTGGTCGGG
GCGGTGGTCGGTGTGATTTACCTGCGTCTGCGCAACGCGAAAACTTCGACACCCATCCCCTTCGGCCCCTATCTGGCCAT
CGCCGGCTGGATTGCCTTGCTCTGGGGTGTTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.837	97.241	0.514
pilD	Vibrio campbellii strain DS40M4	51.773	97.241	0.503
pilD	Acinetobacter baumannii D1279779	45.296	98.966	0.448
pilD	Acinetobacter nosocomialis M2	44.948	98.966	0.445
pilD	Neisseria gonorrhoeae MS11	50	88.966	0.445