Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | ABR335_RS01385 | Genome accession | NZ_CP158453 |
| Coordinates | 291699..292058 (-) | Length | 119 a.a. |
| NCBI ID | WP_014096779.1 | Uniprot ID | - |
| Organism | Heyndrickxia faecalis strain TCI803 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 286699..297058
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABR335_RS01355 (ABR335_01355) | spoIIID | 287448..287714 (+) | 267 | WP_014096774.1 | sporulation transcriptional regulator SpoIIID | - |
| ABR335_RS01360 (ABR335_01360) | - | 288104..289105 (+) | 1002 | WP_014096775.1 | rod shape-determining protein | - |
| ABR335_RS01365 (ABR335_01365) | - | 289144..289932 (+) | 789 | WP_014096776.1 | flagellar hook-basal body protein | - |
| ABR335_RS01370 (ABR335_01370) | - | 289960..290790 (+) | 831 | WP_014096777.1 | flagellar hook-basal body protein | - |
| ABR335_RS01375 (ABR335_01375) | fabZ | 290918..291343 (+) | 426 | WP_014096778.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| ABR335_RS01380 (ABR335_01380) | - | 291528..291692 (-) | 165 | WP_013860712.1 | hypothetical protein | - |
| ABR335_RS01385 (ABR335_01385) | ssbB | 291699..292058 (-) | 360 | WP_014096779.1 | single-stranded DNA-binding protein | Machinery gene |
| ABR335_RS01390 (ABR335_01390) | - | 292365..292787 (+) | 423 | WP_014096780.1 | YwpF-like family protein | - |
| ABR335_RS01395 (ABR335_01395) | - | 292803..295604 (-) | 2802 | WP_017550307.1 | DEAD/DEAH box helicase | - |
Sequence
Protein
Download Length: 119 a.a. Molecular weight: 13455.36 Da Isoelectric Point: 9.9022
>NTDB_id=1011270 ABR335_RS01385 WP_014096779.1 291699..292058(-) (ssbB) [Heyndrickxia faecalis strain TCI803]
MINQVTLVGRLTKDPDLHYTADGKPVLNVTLALNRHYRNQFGETLTDFVQCTLWNKIAENTSKYCAKGSMLGITGRIQTR
HYDNKEGKRVYVTEVIADTVQFLSKRPENKPLQKTGQGG
MINQVTLVGRLTKDPDLHYTADGKPVLNVTLALNRHYRNQFGETLTDFVQCTLWNKIAENTSKYCAKGSMLGITGRIQTR
HYDNKEGKRVYVTEVIADTVQFLSKRPENKPLQKTGQGG
Nucleotide
Download Length: 360 bp
>NTDB_id=1011270 ABR335_RS01385 WP_014096779.1 291699..292058(-) (ssbB) [Heyndrickxia faecalis strain TCI803]
TTGATTAACCAGGTCACATTAGTTGGAAGGCTTACAAAAGATCCGGATCTTCACTACACGGCAGATGGAAAACCGGTGTT
AAATGTTACGCTTGCCTTAAACCGCCATTACCGGAACCAATTTGGCGAAACGTTAACCGATTTTGTCCAATGTACCCTTT
GGAATAAAATCGCAGAAAACACAAGCAAATATTGCGCAAAAGGTTCCATGCTCGGCATTACCGGTCGGATTCAGACCCGC
CATTATGATAATAAAGAAGGAAAAAGGGTTTATGTCACCGAAGTCATTGCCGACACAGTCCAATTTTTAAGCAAACGGCC
GGAAAACAAGCCGCTGCAAAAAACCGGTCAGGGAGGGTAG
TTGATTAACCAGGTCACATTAGTTGGAAGGCTTACAAAAGATCCGGATCTTCACTACACGGCAGATGGAAAACCGGTGTT
AAATGTTACGCTTGCCTTAAACCGCCATTACCGGAACCAATTTGGCGAAACGTTAACCGATTTTGTCCAATGTACCCTTT
GGAATAAAATCGCAGAAAACACAAGCAAATATTGCGCAAAAGGTTCCATGCTCGGCATTACCGGTCGGATTCAGACCCGC
CATTATGATAATAAAGAAGGAAAAAGGGTTTATGTCACCGAAGTCATTGCCGACACAGTCCAATTTTTAAGCAAACGGCC
GGAAAACAAGCCGCTGCAAAAAACCGGTCAGGGAGGGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
61.818 |
92.437 |
0.571 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
52.83 |
89.076 |
0.471 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
46.552 |
97.479 |
0.454 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
41.379 |
97.479 |
0.403 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
42.593 |
90.756 |
0.387 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
42.593 |
90.756 |
0.387 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
41.667 |
90.756 |
0.378 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
41.667 |
90.756 |
0.378 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
41.667 |
90.756 |
0.378 |
| ssbB/cilA | Streptococcus mitis SK321 |
41.667 |
90.756 |
0.378 |
| ssbA | Streptococcus mutans UA159 |
40.741 |
90.756 |
0.37 |