Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   ABOA58_RS26545 Genome accession   NZ_CP158190
Coordinates   5361341..5361703 (-) Length   120 a.a.
NCBI ID   WP_350300665.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain LSJ146     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5356341..5366703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABOA58_RS26530 (ABOA58_26470) - 5357230..5358846 (-) 1617 WP_350300663.1 ABC transporter substrate-binding protein -
  ABOA58_RS26535 (ABOA58_26475) - 5358889..5359857 (-) 969 WP_350300664.1 dipeptide ABC transporter ATP-binding protein -
  ABOA58_RS26540 (ABOA58_26480) - 5359838..5360842 (-) 1005 WP_157831068.1 ABC transporter ATP-binding protein -
  ABOA58_RS26545 (ABOA58_26485) ssbB 5361341..5361703 (-) 363 WP_350300665.1 single-stranded DNA-binding protein Machinery gene
  ABOA58_RS26550 (ABOA58_26490) - 5362064..5362498 (+) 435 WP_350300666.1 YwpF family protein -
  ABOA58_RS26555 (ABOA58_26495) - 5362615..5362896 (-) 282 WP_350300667.1 hypothetical protein -
  ABOA58_RS26560 (ABOA58_26500) fabZ 5363213..5363641 (-) 429 WP_034315755.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ABOA58_RS26565 (ABOA58_26505) - 5363770..5364024 (-) 255 WP_137016469.1 DNA-directed RNA polymerase subunit beta -
  ABOA58_RS26570 (ABOA58_26510) - 5364192..5365034 (-) 843 WP_350300668.1 flagellar hook-basal body protein -
  ABOA58_RS26575 (ABOA58_26515) - 5365088..5365927 (-) 840 WP_350300669.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13684.62 Da        Isoelectric Point: 9.6262

>NTDB_id=1010252 ABOA58_RS26545 WP_350300665.1 5361341..5361703(-) (ssbB) [Peribacillus frigoritolerans strain LSJ146]
MINQVTLVGRLTKDPELRYTPDGKAVSNITLAVNRNFRNTVGNYEADFVQCIIWKKSAENTAQYCKKGAIIGITGRIQTR
RYENQEGKYVYVTEVVAERVQFIGSKQNDVKPKEFEHIGL

Nucleotide


Download         Length: 363 bp        

>NTDB_id=1010252 ABOA58_RS26545 WP_350300665.1 5361341..5361703(-) (ssbB) [Peribacillus frigoritolerans strain LSJ146]
ATGATTAACCAAGTTACCCTCGTCGGCAGGCTTACAAAGGATCCCGAATTAAGATACACACCCGATGGCAAGGCTGTTTC
CAATATCACTTTAGCAGTCAACCGGAACTTTCGTAATACTGTCGGTAACTATGAGGCCGACTTTGTACAGTGTATCATAT
GGAAAAAGTCTGCTGAAAATACTGCTCAATATTGTAAAAAAGGTGCCATAATCGGCATAACTGGCAGAATACAAACAAGG
AGATATGAAAATCAGGAGGGTAAATATGTATATGTAACTGAAGTGGTCGCCGAGAGGGTTCAATTCATTGGGTCTAAACA
AAATGATGTTAAGCCCAAGGAGTTTGAACATATTGGTTTATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.404

95

0.583
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.321

88.333

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

56.604

88.333

0.5
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.283

88.333

0.4
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.396

88.333

0.383
  ssbB/cilA Streptococcus mitis NCTC 12261

43.396

88.333

0.383
  ssbB/cilA Streptococcus mitis SK321

42.453

88.333

0.375
  ssbA Streptococcus mutans UA159

42.453

88.333

0.375
  ssbB/cilA Streptococcus pneumoniae Rx1

42.453

88.333

0.375
  ssbB/cilA Streptococcus pneumoniae D39

42.453

88.333

0.375
  ssbB/cilA Streptococcus pneumoniae R6

42.453

88.333

0.375

Multiple sequence alignment