Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | ABN702_RS22765 | Genome accession | NZ_CP158164 |
| Coordinates | 4526959..4527342 (+) | Length | 127 a.a. |
| NCBI ID | WP_417898849.1 | Uniprot ID | - |
| Organism | Bacillus sp. CSS-39 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4521959..4532342
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABN702_RS22740 (ABN702_22705) | - | 4522653..4522802 (+) | 150 | WP_417898844.1 | hypothetical protein | - |
| ABN702_RS22745 (ABN702_22710) | - | 4522971..4524020 (+) | 1050 | WP_417898845.1 | YecA family protein | - |
| ABN702_RS22750 (ABN702_22715) | - | 4524151..4525089 (+) | 939 | WP_417898846.1 | processed acidic surface protein | - |
| ABN702_RS22755 (ABN702_22720) | - | 4525093..4525650 (+) | 558 | WP_417898847.1 | class D sortase | - |
| ABN702_RS22760 (ABN702_22725) | - | 4526052..4526480 (-) | 429 | WP_417898848.1 | YwpF family protein | - |
| ABN702_RS22765 (ABN702_22730) | ssbB | 4526959..4527342 (+) | 384 | WP_417898849.1 | single-stranded DNA-binding protein | Machinery gene |
| ABN702_RS22770 (ABN702_22735) | - | 4527800..4528261 (+) | 462 | WP_417898850.1 | hypothetical protein | - |
| ABN702_RS22775 (ABN702_22740) | - | 4528322..4528840 (+) | 519 | WP_417898851.1 | VanZ family protein | - |
| ABN702_RS22780 (ABN702_22745) | - | 4528975..4531782 (-) | 2808 | WP_417898852.1 | DEAD/DEAH box helicase | - |
Sequence
Protein
Download Length: 127 a.a. Molecular weight: 14273.41 Da Isoelectric Point: 9.5394
>NTDB_id=1010059 ABN702_RS22765 WP_417898849.1 4526959..4527342(+) (ssbB) [Bacillus sp. CSS-39]
MINQVILVGRLTKDPELRYTSDGTALASFHLAVNRNFKNQDGVVEADFVSCTVWRKLAETTANYCRKGALIGITGRIQTR
KYEGQNGTTVFVTDVVADNVRFLERKPPAVKVEKTVQKELEKVELPF
MINQVILVGRLTKDPELRYTSDGTALASFHLAVNRNFKNQDGVVEADFVSCTVWRKLAETTANYCRKGALIGITGRIQTR
KYEGQNGTTVFVTDVVADNVRFLERKPPAVKVEKTVQKELEKVELPF
Nucleotide
Download Length: 384 bp
>NTDB_id=1010059 ABN702_RS22765 WP_417898849.1 4526959..4527342(+) (ssbB) [Bacillus sp. CSS-39]
GTGATTAATCAAGTTATTCTCGTTGGGCGATTGACGAAGGATCCAGAACTGAGGTATACGAGTGATGGAACGGCATTGGC
AAGCTTTCATCTCGCGGTAAACCGAAATTTCAAAAACCAGGATGGTGTGGTGGAGGCGGATTTTGTATCCTGCACCGTGT
GGAGAAAGCTGGCAGAGACAACAGCCAACTATTGCAGAAAAGGTGCTTTAATCGGAATTACCGGAAGGATCCAGACGAGG
AAATACGAAGGTCAGAACGGTACGACGGTGTTTGTAACGGATGTGGTCGCAGATAATGTGCGATTTTTGGAACGGAAGCC
GCCTGCAGTAAAGGTGGAAAAAACAGTGCAAAAAGAATTGGAAAAAGTGGAGCTGCCATTTTAA
GTGATTAATCAAGTTATTCTCGTTGGGCGATTGACGAAGGATCCAGAACTGAGGTATACGAGTGATGGAACGGCATTGGC
AAGCTTTCATCTCGCGGTAAACCGAAATTTCAAAAACCAGGATGGTGTGGTGGAGGCGGATTTTGTATCCTGCACCGTGT
GGAGAAAGCTGGCAGAGACAACAGCCAACTATTGCAGAAAAGGTGCTTTAATCGGAATTACCGGAAGGATCCAGACGAGG
AAATACGAAGGTCAGAACGGTACGACGGTGTTTGTAACGGATGTGGTCGCAGATAATGTGCGATTTTTGGAACGGAAGCC
GCCTGCAGTAAAGGTGGAAAAAACAGTGCAAAAAGAATTGGAAAAAGTGGAGCTGCCATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
64.486 |
84.252 |
0.543 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
61.321 |
83.465 |
0.512 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
56.604 |
83.465 |
0.472 |
| ssbA | Streptococcus mutans UA159 |
43.182 |
100 |
0.449 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
41.667 |
100 |
0.433 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
41.667 |
100 |
0.433 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
40.909 |
100 |
0.425 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
40.909 |
100 |
0.425 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
40.909 |
100 |
0.425 |
| ssbB/cilA | Streptococcus mitis SK321 |
40.909 |
100 |
0.425 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
40.909 |
100 |
0.425 |