Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   ABN702_RS00015 Genome accession   NZ_CP158164
Coordinates   1952..2335 (+) Length   127 a.a.
NCBI ID   WP_417898849.1    Uniprot ID   -
Organism   Bacillus sp. CSS-39     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1..7335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABN702_RS00005 (ABN702_00005) - 86..643 (+) 558 WP_417898847.1 class D sortase -
  ABN702_RS00010 (ABN702_00010) - 1045..1473 (-) 429 WP_417898848.1 YwpF family protein -
  ABN702_RS00015 (ABN702_00015) ssbB 1952..2335 (+) 384 WP_417898849.1 single-stranded DNA-binding protein Machinery gene
  ABN702_RS00020 (ABN702_00020) - 2793..3254 (+) 462 WP_417898850.1 hypothetical protein -
  ABN702_RS00025 (ABN702_00025) - 3315..3833 (+) 519 WP_417898851.1 VanZ family protein -
  ABN702_RS00030 (ABN702_00030) - 3968..6775 (-) 2808 WP_417898852.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14273.41 Da        Isoelectric Point: 9.5394

>NTDB_id=1010006 ABN702_RS00015 WP_417898849.1 1952..2335(+) (ssbB) [Bacillus sp. CSS-39]
MINQVILVGRLTKDPELRYTSDGTALASFHLAVNRNFKNQDGVVEADFVSCTVWRKLAETTANYCRKGALIGITGRIQTR
KYEGQNGTTVFVTDVVADNVRFLERKPPAVKVEKTVQKELEKVELPF

Nucleotide


Download         Length: 384 bp        

>NTDB_id=1010006 ABN702_RS00015 WP_417898849.1 1952..2335(+) (ssbB) [Bacillus sp. CSS-39]
GTGATTAATCAAGTTATTCTCGTTGGGCGATTGACGAAGGATCCAGAACTGAGGTATACGAGTGATGGAACGGCATTGGC
AAGCTTTCATCTCGCGGTAAACCGAAATTTCAAAAACCAGGATGGTGTGGTGGAGGCGGATTTTGTATCCTGCACCGTGT
GGAGAAAGCTGGCAGAGACAACAGCCAACTATTGCAGAAAAGGTGCTTTAATCGGAATTACCGGAAGGATCCAGACGAGG
AAATACGAAGGTCAGAACGGTACGACGGTGTTTGTAACGGATGTGGTCGCAGATAATGTGCGATTTTTGGAACGGAAGCC
GCCTGCAGTAAAGGTGGAAAAAACAGTGCAAAAAGAATTGGAAAAAGTGGAGCTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.486

84.252

0.543
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.321

83.465

0.512
  ssb Latilactobacillus sakei subsp. sakei 23K

56.604

83.465

0.472
  ssbA Streptococcus mutans UA159

43.182

100

0.449
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.667

100

0.433
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.667

100

0.433
  ssbB/cilA Streptococcus pneumoniae Rx1

40.909

100

0.425
  ssbB/cilA Streptococcus pneumoniae D39

40.909

100

0.425
  ssbB/cilA Streptococcus pneumoniae R6

40.909

100

0.425
  ssbB/cilA Streptococcus mitis SK321

40.909

100

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

40.909

100

0.425

Multiple sequence alignment