Detailed information NTG1009891

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: H0510_RS08405
• Genome accession: NZ_LR822019
• Coordinates: 1623502..1623894 (-)
• Length: 130 a.a.
• NCBI ID: WP_096811677.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus isolate STH_CIRM_772
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1618502..1628894

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H0510_RS08380 (STHERMO_1867)	-	1619041..1619874 (-)	834	WP_024010090.1	putative RNA methyltransferase	-
H0510_RS08390 (STHERMO_1868)	-	1620243..1620410 (+)	168	WP_179966811.1	class IIb bacteriocin, lactobin A/cerein 7B family	-
H0510_RS09985 (STHERMO_1869)	-	1620463..1620726 (+)	264	WP_022096902.1	hypothetical protein	-
H0510_RS08395 (STHERMO_1870)	tadA	1620806..1621324 (-)	519	WP_179966812.1	tRNA adenosine(34) deaminase TadA	-
H0510_RS08400 (STHERMO_1871)	-	1621546..1622795 (+)	1250	Protein_1616	ISL3 family transposase	-
H0510_RS08405 (STHERMO_1873)	ssbA	1623502..1623894 (-)	393	WP_096811677.1	single-stranded DNA-binding protein	Machinery gene
H0510_RS08410 (STHERMO_1874)	-	1624100..1624327 (-)	228	WP_011226611.1	sulfurtransferase TusA family protein	-
H0510_RS08415 (STHERMO_1875)	-	1624342..1625373 (-)	1032	WP_096811678.1	YeeE/YedE family protein	-
H0510_RS08420 (STHERMO_1877)	ytpR	1625511..1626134 (-)	624	WP_002952017.1	YtpR family tRNA-binding protein	-
H0510_RS08425 (STHERMO_1878)	-	1626144..1626458 (-)	315	WP_002945230.1	thioredoxin family protein	-
H0510_RS08430 (STHERMO_1879)	-	1626455..1626739 (-)	285	WP_002952020.1	DUF4651 domain-containing protein	-
H0510_RS08435 (STHERMO_1880)	pepA	1626839..1627906 (+)	1068	WP_096811679.1	glutamyl aminopeptidase	-
H0510_RS08440 (STHERMO_1881)	proC	1627922..1628692 (+)	771	WP_011226616.1	pyrroline-5-carboxylate reductase	-

Sequence

Protein

• Length: 130 a.a.
• Molecular weight: 14807.71 Da
• Isoelectric Point: 5.9275

>NTDB_id=1009891 H0510_RS08405 WP_096811677.1 1623502..1623894(-) (ssbA) [Streptococcus thermophilus isolate STH_CIRM_772]
MYNKVILIGRLTATPEMVKTASDRSFTRVTVAVNRRYKTQNGEREADFITVVVWGRLAETLASYASKGSLISLDGEIRTR
KYDKDGQTHYVTEVLCSSFQLLESRAQRAVRENNPDNDLADLILEEEFPF

Nucleotide

• Length: 393 bp

>NTDB_id=1009891 H0510_RS08405 WP_096811677.1 1623502..1623894(-) (ssbA) [Streptococcus thermophilus isolate STH_CIRM_772]
ATGTATAACAAAGTAATTTTAATTGGACGTTTGACAGCAACACCTGAAATGGTTAAGACTGCTAGTGACAGGTCTTTTAC
ACGTGTCACAGTTGCGGTTAATCGTCGCTATAAGACGCAAAATGGTGAGCGTGAGGCTGATTTTATCACAGTAGTGGTTT
GGGGCCGTTTAGCTGAGACATTGGCATCTTATGCTAGCAAGGGAAGTTTAATTTCTCTTGATGGTGAGATTCGCACTCGT
AAGTATGATAAGGATGGTCAAACTCATTACGTTACTGAAGTGCTTTGTTCCTCTTTCCAACTTCTGGAGAGTCGTGCTCA
GCGTGCTGTTAGGGAAAATAATCCTGACAATGACTTGGCTGACCTGATTTTAGAAGAAGAGTTTCCCTTTTAG

Domains

Predicted by InterProScan.

• Single-strand binding protein family (SSB) (3-102)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Streptococcus mutans UA159	78.626	100	0.792
ssbB	Streptococcus sobrinus strain NIDR 6715-7	75.573	100	0.762
ssbB/cilA	Streptococcus pneumoniae TIGR4	74.046	100	0.746
ssbB/cilA	Streptococcus mitis SK321	73.282	100	0.738
ssbB/cilA	Streptococcus pneumoniae R6	73.282	100	0.738
ssbB/cilA	Streptococcus pneumoniae Rx1	73.282	100	0.738
ssbB/cilA	Streptococcus pneumoniae D39	73.282	100	0.738
ssbB/cilA	Streptococcus mitis NCTC 12261	71.756	100	0.723
ssbB	Lactococcus lactis subsp. cremoris KW2	62.5	86.154	0.538
ssbA	Bacillus subtilis subsp. subtilis str. 168	47.17	81.538	0.385
ssb	Latilactobacillus sakei subsp. sakei 23K	46.226	81.538	0.377