Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABNQ20_RS26170 Genome accession   NZ_CP158051
Coordinates   5645346..5646563 (+) Length   405 a.a.
NCBI ID   WP_016254080.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain P1110     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 5642109..5653166 5645346..5646563 within 0


Gene organization within MGE regions


Location: 5642109..5653166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNQ20_RS26155 (ABNQ20_26150) - 5642109..5642666 (-) 558 WP_225011032.1 hypothetical protein -
  ABNQ20_RS26160 (ABNQ20_26155) - 5642871..5643410 (-) 540 WP_003141352.1 pilin -
  ABNQ20_RS26165 (ABNQ20_26160) pilB 5643639..5645342 (+) 1704 WP_003141354.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABNQ20_RS26170 (ABNQ20_26165) pilC 5645346..5646563 (+) 1218 WP_016254080.1 type II secretion system F family protein Machinery gene
  ABNQ20_RS26175 (ABNQ20_26170) pilD 5646566..5647438 (+) 873 WP_003141356.1 type IV prepilin peptidase/methyltransferase PilD Machinery gene
  ABNQ20_RS26180 (ABNQ20_26175) coaE 5647435..5648046 (+) 612 WP_003094654.1 dephospho-CoA kinase -
  ABNQ20_RS26185 (ABNQ20_26180) yacG 5648043..5648243 (+) 201 WP_003094656.1 DNA gyrase inhibitor YacG -
  ABNQ20_RS26190 (ABNQ20_26185) - 5648280..5648489 (-) 210 WP_003094660.1 hypothetical protein -
  ABNQ20_RS26195 (ABNQ20_26190) - 5648595..5649284 (-) 690 WP_003103868.1 energy-coupling factor ABC transporter permease -
  ABNQ20_RS26200 (ABNQ20_26195) - 5649281..5649751 (-) 471 WP_003094664.1 hypothetical protein -
  ABNQ20_RS26205 (ABNQ20_26200) - 5649836..5651113 (-) 1278 WP_000610830.1 ISL3 family transposase -
  ABNQ20_RS26210 (ABNQ20_26205) - 5651126..5652130 (-) 1005 WP_040363373.1 permease -
  ABNQ20_RS26215 (ABNQ20_26210) - 5652272..5652586 (+) 315 WP_000349485.1 helix-turn-helix domain-containing protein -
  ABNQ20_RS26220 (ABNQ20_26215) - 5652690..5653166 (-) 477 WP_353629169.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44041.92 Da        Isoelectric Point: 9.8417

>NTDB_id=1009703 ABNQ20_RS26170 WP_016254080.1 5645346..5646563(+) (pilC) [Pseudomonas aeruginosa strain P1110]
MADKALKTSVFIWEGTDKKGSKVKGELAGQNPMLVKAQLRKQGINPLKVRKKGITLFGAGKKIKPMDIALFTRQMSTMMG
AGVPLLQSFDIIGEGFENPNMRKLVDEIKQDVAAGNSLASSLRKKPIYFDDLYCNLVDAGEQSGALETLLDRVATYKEKT
ESLKAKIKKAMTYPIAVIVVALVVSAILLIKVVPQFQSVFANFGAELPAFTQMVINLSEMLQEWWLIVLIGLFAAAFAFR
EAHRRSQKLRDSVDRGLLKLPIIGGILYKSAIARYARTLSTTFAAGVPLVEALDSVSGATGNVVFKNAVTKIKQDVSSGM
QLNFSMRTTNVFPSMAIQMAAIGEESGSLDEMLGKVAGFYEEEVDNAVDNLTTLMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGSVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1009703 ABNQ20_RS26170 WP_016254080.1 5645346..5646563(+) (pilC) [Pseudomonas aeruginosa strain P1110]
ATGGCGGACAAAGCGTTAAAGACCAGTGTCTTCATCTGGGAAGGCACTGATAAGAAAGGCAGCAAGGTCAAAGGAGAGTT
GGCCGGGCAAAACCCTATGCTGGTGAAGGCTCAACTGCGCAAACAGGGTATCAACCCACTAAAGGTCCGCAAGAAAGGTA
TCACCCTGTTTGGGGCAGGGAAGAAGATTAAGCCCATGGACATCGCCCTGTTCACTCGGCAGATGTCTACCATGATGGGT
GCCGGCGTACCGTTACTGCAATCTTTTGACATCATCGGCGAAGGATTCGAAAATCCAAACATGCGCAAGCTAGTCGATGA
GATCAAGCAGGATGTTGCCGCCGGTAACAGCTTAGCCAGTTCACTTCGAAAGAAACCCATTTACTTCGATGATCTCTACT
GCAACCTGGTCGATGCTGGCGAACAGTCCGGTGCTTTGGAGACATTATTGGATCGGGTAGCAACTTATAAAGAAAAGACA
GAATCCCTGAAAGCCAAAATTAAAAAAGCCATGACTTATCCCATTGCAGTAATTGTAGTGGCCCTTGTGGTATCGGCGAT
CCTTCTGATAAAAGTGGTCCCACAGTTCCAGTCCGTATTTGCAAATTTTGGTGCCGAGTTGCCGGCCTTTACTCAAATGG
TCATCAATCTTTCCGAGATGCTTCAAGAGTGGTGGCTCATAGTGCTTATTGGTCTTTTTGCCGCAGCTTTTGCATTTAGG
GAAGCTCATCGGCGCTCGCAAAAACTGAGAGATTCAGTAGATCGGGGCCTGCTGAAACTACCTATCATCGGCGGGATACT
TTACAAATCAGCTATCGCCCGCTACGCCCGAACGCTATCCACTACCTTTGCGGCTGGAGTGCCTCTGGTAGAAGCTCTGG
ACTCCGTTTCCGGAGCAACTGGCAACGTGGTATTCAAGAATGCCGTTACCAAGATCAAACAAGACGTGTCCAGCGGCATG
CAATTGAACTTTTCCATGCGCACCACCAATGTTTTCCCCAGTATGGCTATCCAGATGGCTGCAATTGGCGAGGAATCAGG
TTCGCTAGATGAGATGTTAGGAAAAGTTGCCGGTTTCTATGAGGAAGAAGTCGATAACGCCGTCGACAACCTGACAACGT
TGATGGAGCCGATGATCATGGCCGTGCTCGGCGTACTGGTCGGCGGCCTGATCATCGCTATGTATCTACCGATCTTCCAA
CTGGGTTCCGTTGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

79.753

100

0.798
  pilC Acinetobacter baumannii D1279779

60.891

99.753

0.607
  pilC Acinetobacter baylyi ADP1

59.852

100

0.6
  pilC Legionella pneumophila strain ERS1305867

55.303

97.778

0.541
  pilG Neisseria meningitidis 44/76-A

46.269

99.259

0.459
  pilG Neisseria gonorrhoeae MS11

46.02

99.259

0.457
  pilC Vibrio cholerae strain A1552

42.222

100

0.422
  pilC Vibrio campbellii strain DS40M4

40.909

97.778

0.4
  pilC Thermus thermophilus HB27

38.404

99.012

0.38

Multiple sequence alignment