Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABHF91_RS15310 Genome accession   NZ_CP158016
Coordinates   3247740..3248984 (+) Length   414 a.a.
NCBI ID   WP_409421111.1    Uniprot ID   -
Organism   Pseudaeromonas sp. ZJS20     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3242740..3253984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABHF91_RS15295 (ABHF91_15280) nadC 3244007..3244858 (+) 852 WP_409421108.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ABHF91_RS15300 (ABHF91_15285) tapA 3245382..3245861 (+) 480 WP_409421109.1 type IVa pilus major pilin TapA -
  ABHF91_RS15305 (ABHF91_15290) pilB 3245942..3247651 (+) 1710 WP_409421110.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABHF91_RS15310 (ABHF91_15295) pilC 3247740..3248984 (+) 1245 WP_409421111.1 type II secretion system F family protein Machinery gene
  ABHF91_RS15315 (ABHF91_15300) pilD 3249400..3250269 (+) 870 WP_409421112.1 prepilin peptidase Machinery gene
  ABHF91_RS15320 (ABHF91_15305) coaE 3250273..3250932 (+) 660 WP_409421113.1 dephospho-CoA kinase -
  ABHF91_RS15325 (ABHF91_15310) zapD 3250965..3251699 (+) 735 WP_409421114.1 cell division protein ZapD -
  ABHF91_RS15330 (ABHF91_15315) yacG 3251714..3251914 (+) 201 WP_409421115.1 DNA gyrase inhibitor YacG -
  ABHF91_RS15335 (ABHF91_15320) mutT 3251911..3252321 (-) 411 WP_409421116.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45228.34 Da        Isoelectric Point: 9.7772

>NTDB_id=1009528 ABHF91_RS15310 WP_409421111.1 3247740..3248984(+) (pilC) [Pseudaeromonas sp. ZJS20]
MALAPTRNVPAPKKYYPFRWEGLNRKGQKVAGEMQADSITTVKAELRKQGVNASKVRKKSQSIFSKHANAVKPMDIAMIS
RQICTMLSAGVPLVQSIQLLSRSHEKSGVRELLGQVCADLESGIPLSQALRKHPRYFDDLYCDLVDAGEQSGALEQIYDR
IATYKEKAEALKSKIKKALFYPAAVMVVAIIVTSILLLFVVPQFEEIFSSFGAELPAFTQMVIGLSRFLQKSWYFFFGGV
AALIFAYVRAHRRSQGVRDATDKAVLKLPVVGMILHKAAMARFARTLATTFAAGIPLVEALISAAGASGNVVYKTAVLAI
RNEVIAGMQMHVAMRTVDLFPDMVTQMVMIGEESGAIDDMLSKIAGIYEQQVDDLVDGLSSLIEPIIMVVLGVLVGGLVV
AMYLPIFKLGSVIH

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=1009528 ABHF91_RS15310 WP_409421111.1 3247740..3248984(+) (pilC) [Pseudaeromonas sp. ZJS20]
ATGGCGCTGGCCCCCACAAGAAACGTTCCCGCCCCGAAGAAGTACTACCCCTTTCGCTGGGAGGGGCTGAACCGCAAGGG
CCAAAAGGTCGCCGGCGAGATGCAGGCCGACAGCATCACCACCGTCAAGGCGGAGCTGCGCAAGCAGGGGGTGAATGCCA
GCAAGGTGCGCAAGAAGAGTCAGTCCATCTTCTCCAAGCACGCCAACGCCGTGAAGCCCATGGACATCGCCATGATCTCC
CGGCAGATCTGCACCATGCTCTCCGCCGGTGTGCCATTGGTGCAATCCATCCAGCTGCTCTCCCGCAGCCACGAGAAGAG
CGGCGTGCGGGAGCTGCTGGGTCAGGTCTGTGCCGATCTCGAATCGGGTATCCCCCTCTCCCAGGCATTGCGCAAGCACC
CACGCTACTTCGACGATCTCTACTGCGATCTGGTGGATGCCGGCGAGCAATCCGGCGCATTGGAGCAAATCTATGATCGC
ATCGCCACCTACAAGGAGAAGGCCGAGGCCCTCAAGTCCAAGATCAAGAAGGCCCTCTTCTACCCGGCGGCGGTCATGGT
GGTGGCCATCATAGTCACCTCTATTCTGCTGCTGTTTGTGGTACCCCAGTTTGAGGAGATCTTCTCCAGCTTCGGCGCCG
AGCTGCCGGCCTTCACCCAGATGGTCATCGGCCTCTCCCGCTTCCTGCAAAAGTCCTGGTATTTCTTCTTTGGCGGGGTG
GCGGCTCTGATCTTCGCCTATGTGCGGGCCCATAGACGCTCCCAGGGGGTGCGGGATGCCACCGACAAGGCCGTGCTGAA
GCTGCCCGTGGTGGGCATGATACTGCACAAGGCCGCCATGGCCCGCTTCGCCCGCACCCTGGCCACCACCTTCGCCGCCG
GTATCCCCCTGGTGGAGGCCCTGATCTCCGCCGCCGGCGCCTCGGGCAACGTGGTGTACAAGACGGCGGTGCTGGCCATC
CGCAACGAGGTGATCGCCGGCATGCAGATGCACGTGGCCATGCGCACCGTGGATCTGTTTCCGGACATGGTGACCCAGAT
GGTGATGATCGGCGAAGAGTCCGGTGCCATTGACGACATGCTCTCCAAGATCGCCGGCATCTATGAGCAGCAGGTGGACG
ATCTGGTGGACGGCCTGTCGAGCCTCATCGAACCCATCATCATGGTGGTGCTGGGGGTGCTGGTGGGGGGCCTGGTGGTG
GCCATGTACCTGCCCATCTTCAAGCTGGGCAGCGTCATTCACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(283-405)

Type II secretion system (T2SS), protein F (T2SSF)

(80-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.071

95.652

0.546
  pilC Legionella pneumophila strain ERS1305867

52.778

95.652

0.505
  pilC Acinetobacter baumannii D1279779

51.637

95.894

0.495
  pilC Acinetobacter baylyi ADP1

51.385

95.894

0.493
  pilC Vibrio campbellii strain DS40M4

46.851

95.894

0.449
  pilC Vibrio cholerae strain A1552

46.096

95.894

0.442
  pilG Neisseria meningitidis 44/76-A

41.045

97.101

0.399
  pilG Neisseria gonorrhoeae MS11

41.045

97.101

0.399
  pilC Thermus thermophilus HB27

38.155

96.86

0.37

Multiple sequence alignment