Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ABHF91_RS15315 Genome accession   NZ_CP158016
Coordinates   3249400..3250269 (+) Length   289 a.a.
NCBI ID   WP_409421112.1    Uniprot ID   -
Organism   Pseudaeromonas sp. ZJS20     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3244400..3255269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABHF91_RS15300 (ABHF91_15285) tapA 3245382..3245861 (+) 480 WP_409421109.1 type IVa pilus major pilin TapA -
  ABHF91_RS15305 (ABHF91_15290) pilB 3245942..3247651 (+) 1710 WP_409421110.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABHF91_RS15310 (ABHF91_15295) pilC 3247740..3248984 (+) 1245 WP_409421111.1 type II secretion system F family protein Machinery gene
  ABHF91_RS15315 (ABHF91_15300) pilD 3249400..3250269 (+) 870 WP_409421112.1 prepilin peptidase Machinery gene
  ABHF91_RS15320 (ABHF91_15305) coaE 3250273..3250932 (+) 660 WP_409421113.1 dephospho-CoA kinase -
  ABHF91_RS15325 (ABHF91_15310) zapD 3250965..3251699 (+) 735 WP_409421114.1 cell division protein ZapD -
  ABHF91_RS15330 (ABHF91_15315) yacG 3251714..3251914 (+) 201 WP_409421115.1 DNA gyrase inhibitor YacG -
  ABHF91_RS15335 (ABHF91_15320) mutT 3251911..3252321 (-) 411 WP_409421116.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 31875.28 Da        Isoelectric Point: 7.6413

>NTDB_id=1009529 ABHF91_RS15315 WP_409421112.1 3249400..3250269(+) (pilD) [Pseudaeromonas sp. ZJS20]
MLTDLFHQLPWLYYLLLTLFCLLVGSFLNVVIHRLPIMLERSWKAEFADYFGQPQPADGLPARYNLLLPGSNCPHCGHAI
SALENIPVLSWLALRGRCRGCGAPISIRYPLVELANALLCLLVAWGQPPSLMLAGYLLLTWALVALTFIDLDKMLLPDQI
TLPLLWLGLLLNLLTGTVPLADAVIGAMAGYLVLWCLYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPLILILSSLV
GAAIGISLLLLRRHQAGKPIPFGPYLTLAGFIALNWGDAILHWYLQHLV

Nucleotide


Download         Length: 870 bp        

>NTDB_id=1009529 ABHF91_RS15315 WP_409421112.1 3249400..3250269(+) (pilD) [Pseudaeromonas sp. ZJS20]
ATGTTGACTGACCTGTTCCACCAACTCCCCTGGCTCTACTACCTGCTGCTGACCCTCTTTTGCCTCTTGGTGGGCAGCTT
CTTAAATGTGGTGATCCACCGCCTGCCCATCATGCTGGAGCGCAGCTGGAAGGCGGAATTTGCCGACTACTTCGGTCAAC
CACAGCCCGCGGATGGCCTGCCGGCCCGCTACAACCTGCTGTTGCCGGGCTCCAACTGCCCCCACTGCGGCCATGCCATC
AGCGCCCTGGAAAACATCCCTGTGCTCAGCTGGCTGGCGCTGCGGGGCCGCTGCCGTGGCTGTGGCGCCCCCATCTCGAT
TCGCTACCCCCTGGTGGAGCTGGCCAACGCCCTGCTGTGCCTGTTGGTGGCCTGGGGCCAGCCCCCCAGCCTGATGCTGG
CCGGTTATCTGCTGCTGACCTGGGCCCTGGTGGCCCTCACCTTCATCGATCTGGACAAGATGCTGCTGCCGGATCAGATC
ACCCTGCCCCTGCTCTGGCTGGGCCTGTTGCTGAACCTGCTCACCGGCACAGTCCCCTTGGCGGATGCGGTGATCGGCGC
CATGGCCGGTTACCTGGTGCTCTGGTGCCTCTACTGGGGCTTCAAGCTGCTGACCGGCAAGGAGGGCATGGGCTATGGGG
ATTTCAAGCTGCTGGCGGCCCTGGGGGCCTGGCTGGGCTGGCAATCCCTGCCACTCATCCTCATTCTCTCCTCCCTGGTG
GGTGCCGCCATCGGCATCAGCCTGTTGTTGCTGCGGCGCCATCAGGCCGGCAAGCCGATCCCCTTCGGCCCCTACCTGAC
CCTGGCGGGCTTCATCGCCCTGAACTGGGGCGATGCCATCCTCCACTGGTATCTGCAGCACCTGGTGTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(19-125)

Type IV leader peptidase family (Peptidase_A24)

(138-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

56.055

100

0.561
  pilD Vibrio campbellii strain DS40M4

52.249

100

0.522
  pilD Acinetobacter baumannii D1279779

50.368

94.118

0.474
  pilD Acinetobacter nosocomialis M2

49.632

94.118

0.467
  pilD Neisseria gonorrhoeae MS11

49.446

93.772

0.464

Multiple sequence alignment