Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABNP46_RS02325 Genome accession   NZ_CP157875
Coordinates   475695..476936 (-) Length   413 a.a.
NCBI ID   WP_349920822.1    Uniprot ID   -
Organism   Aeromonas veronii strain Ichip_C_3-7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 470695..481936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP46_RS02295 (ABNP46_02290) - 471457..472641 (+) 1185 WP_349920816.1 tetratricopeptide repeat protein -
  ABNP46_RS02300 (ABNP46_02295) mutT 472650..473057 (+) 408 WP_349920817.1 8-oxo-dGTP diphosphatase MutT -
  ABNP46_RS02305 (ABNP46_02300) yacG 473140..473334 (-) 195 WP_349920818.1 DNA gyrase inhibitor YacG -
  ABNP46_RS02310 (ABNP46_02305) zapD 473347..474069 (-) 723 WP_349920819.1 cell division protein ZapD -
  ABNP46_RS02315 (ABNP46_02310) coaE 474107..474721 (-) 615 WP_349920820.1 dephospho-CoA kinase -
  ABNP46_RS02320 (ABNP46_02315) pilD 474740..475612 (-) 873 WP_349920821.1 A24 family peptidase Machinery gene
  ABNP46_RS02325 (ABNP46_02320) pilC 475695..476936 (-) 1242 WP_349920822.1 type II secretion system F family protein Machinery gene
  ABNP46_RS02330 (ABNP46_02325) pilB 477059..478765 (-) 1707 WP_349920823.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  ABNP46_RS02335 (ABNP46_02330) - 478769..479209 (-) 441 WP_349922340.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ABNP46_RS02340 (ABNP46_02335) nadC 479539..480396 (-) 858 WP_349920824.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ABNP46_RS02345 (ABNP46_02340) - 480400..480870 (-) 471 WP_349920825.1 retropepsin-like aspartic protease -
  ABNP46_RS02350 (ABNP46_02345) ampD 481007..481582 (+) 576 WP_349920826.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45521.56 Da        Isoelectric Point: 9.7909

>NTDB_id=1008747 ABNP46_RS02325 WP_349920822.1 475695..476936(-) (pilC) [Aeromonas veronii strain Ichip_C_3-7]
MATLAQRQNTPKKVFSFRWHGVNRKGLKVSGELQADSINTVKIELRKQGVNVTKVSKQSQGLFSKGGAKIKPMDIAVISR
QITTMLSAGVPLVQSLQIIARGHEKAAVRELIGQIAADVETGTPMSEALRRHPRHFDDLYCDLVEAGEHSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPAFTRFVIAISRFMQDWWYLIFGGIG
LAIFLYVRAWRSSQKVRDNTDKFVLSIPIVGSILHKAAMARFARTLSTTFSAGIPLVDALVSSAGASGNYVYRTAIMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDMVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=1008747 ABNP46_RS02325 WP_349920822.1 475695..476936(-) (pilC) [Aeromonas veronii strain Ichip_C_3-7]
ATGGCCACATTAGCGCAAAGACAGAACACCCCGAAAAAAGTCTTCTCCTTCCGCTGGCACGGGGTCAATCGCAAGGGGCT
GAAAGTCTCTGGCGAATTGCAGGCCGACAGCATCAACACCGTCAAAATCGAGCTGCGCAAGCAGGGCGTCAACGTCACCA
AGGTCAGCAAGCAGAGTCAGGGGTTGTTTTCCAAGGGCGGCGCCAAGATCAAGCCCATGGACATCGCCGTCATCTCCCGC
CAGATCACCACCATGCTTTCCGCCGGCGTGCCCCTGGTGCAGAGTCTGCAGATCATCGCTCGCGGCCATGAAAAAGCCGC
CGTGCGCGAACTGATAGGCCAGATTGCCGCCGATGTGGAGACCGGTACCCCCATGTCCGAGGCGCTGCGTCGCCATCCTC
GTCACTTCGATGATCTCTATTGCGATCTGGTGGAAGCGGGGGAGCACTCCGGCGCGCTGGAGACCATCTACGACCGGATC
GCCACCTACCGGGAGAAGAGCGAAGCACTCAAGTCCAAGATCAAGAAGGCGATGTTCTACCCGACCATGGTCATCCTGGT
GGCCATCGTAGTGACCTCCATCCTGCTGCTGTTCGTCATTCCCCAGTTCGAAGACATCTTCAAGAGCTTCGGGGCCGAGC
TCCCCGCCTTCACCCGTTTCGTCATCGCCATCTCCCGCTTCATGCAGGATTGGTGGTATTTGATCTTCGGCGGCATCGGC
CTCGCCATCTTCTTGTACGTGCGGGCCTGGCGCAGCTCCCAGAAGGTGCGCGACAACACGGACAAATTCGTGCTCAGCAT
CCCCATCGTGGGATCCATCCTGCACAAGGCGGCCATGGCGCGCTTCGCCCGCACGCTCTCCACCACCTTCTCCGCCGGTA
TCCCCCTGGTGGATGCCCTGGTCTCCTCTGCCGGCGCCTCCGGCAACTATGTCTATCGCACCGCCATCATGGCTATTCGC
AACGAAGTGGTGGCGGGCATGCAGATCAACGTCGCCATGCGCACCGTCGACCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATCGGTGAGGAGTCCGGCGCCATCGATGACATGCTCTCCAAGGTGGCGACCATCTTCGAGCAGGAGGTGGATGACA
TGGTCGACGGTCTCACCAGTCTGCTCGAACCCCTCATCATGGTGGTGCTCGGGGTGCTGGTCGGCGGCATGGTGGTCGCC
ATGTATCTGCCCATCTTCAAACTGGGCTCTGTGATACACTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.566

95.884

0.542
  pilC Acinetobacter baumannii D1279779

53.865

97.094

0.523
  pilC Acinetobacter baylyi ADP1

52.645

96.126

0.506
  pilC Legionella pneumophila strain ERS1305867

51.605

98.063

0.506
  pilC Vibrio cholerae strain A1552

47.42

98.547

0.467
  pilC Vibrio campbellii strain DS40M4

46.04

97.821

0.45
  pilG Neisseria meningitidis 44/76-A

41.085

93.705

0.385
  pilG Neisseria gonorrhoeae MS11

41.085

93.705

0.385
  pilC Thermus thermophilus HB27

38

96.852

0.368

Multiple sequence alignment