Detailed information NTG1008746

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABNP46_RS02320
• Genome accession: NZ_CP157875
• Coordinates: 474740..475612 (-)
• Length: 290 a.a.
• NCBI ID: WP_349920821.1
• Uniprot ID: -
• Organism: Aeromonas veronii strain Ichip_C_3-7
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 469740..480612

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABNP46_RS02295 (ABNP46_02290)	-	471457..472641 (+)	1185	WP_349920816.1	tetratricopeptide repeat protein	-
ABNP46_RS02300 (ABNP46_02295)	mutT	472650..473057 (+)	408	WP_349920817.1	8-oxo-dGTP diphosphatase MutT	-
ABNP46_RS02305 (ABNP46_02300)	yacG	473140..473334 (-)	195	WP_349920818.1	DNA gyrase inhibitor YacG	-
ABNP46_RS02310 (ABNP46_02305)	zapD	473347..474069 (-)	723	WP_349920819.1	cell division protein ZapD	-
ABNP46_RS02315 (ABNP46_02310)	coaE	474107..474721 (-)	615	WP_349920820.1	dephospho-CoA kinase	-
ABNP46_RS02320 (ABNP46_02315)	pilD	474740..475612 (-)	873	WP_349920821.1	A24 family peptidase	Machinery gene
ABNP46_RS02325 (ABNP46_02320)	pilC	475695..476936 (-)	1242	WP_349920822.1	type II secretion system F family protein	Machinery gene
ABNP46_RS02330 (ABNP46_02325)	pilB	477059..478765 (-)	1707	WP_349920823.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
ABNP46_RS02335 (ABNP46_02330)	-	478769..479209 (-)	441	WP_349922340.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
ABNP46_RS02340 (ABNP46_02335)	nadC	479539..480396 (-)	858	WP_349920824.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32035.26 Da
• Isoelectric Point: 6.9375

>NTDB_id=1008746 ABNP46_RS02320 WP_349920821.1 474740..475612(-) (pilD) [Aeromonas veronii strain Ichip_C_3-7]
MASLIELAQALPWLYFSLIFLFSLMIGSFLNVVIHRLPIMLERDWQAEYRSYFDSEPAAASVPPYNLMVPRSCCPHCGHA
ITAIENIPLLSWLWLKGRCRSCQAPISVRYPLVELLTALLSVVVAATLTPGWGTLAALVLTWTLIALTFIDLDKMLLPDQ
LTLPLLWAGLLFNLLGGFVSLGDAVVGAMVGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAIIGIGLIALRKHHQANPIPFGPYLAIASWAALLWGDSITRWYLDWVL

Nucleotide

• Length: 873 bp

>NTDB_id=1008746 ABNP46_RS02320 WP_349920821.1 474740..475612(-) (pilD) [Aeromonas veronii strain Ichip_C_3-7]
ATGGCCTCTCTCATCGAACTGGCTCAGGCGCTGCCCTGGCTCTATTTTTCCCTGATCTTCCTCTTTTCCCTGATGATCGG
CAGCTTCCTCAATGTGGTCATCCATCGCCTGCCCATCATGCTGGAGCGCGACTGGCAGGCCGAATACCGCAGCTACTTCG
ACAGCGAACCCGCAGCAGCTTCTGTTCCCCCCTACAACCTGATGGTGCCACGCTCCTGCTGCCCTCATTGCGGTCATGCC
ATCACGGCCATCGAGAACATTCCCCTGCTGAGCTGGCTCTGGCTCAAGGGGCGCTGCCGCAGCTGTCAGGCGCCGATCTC
GGTGCGTTATCCCCTGGTCGAACTGCTGACGGCCCTGTTGTCCGTGGTGGTTGCGGCGACCCTCACTCCGGGCTGGGGCA
CCCTGGCCGCCCTGGTGCTGACCTGGACCCTGATTGCACTCACCTTCATCGATCTGGACAAGATGCTGCTGCCGGATCAG
CTCACCCTGCCGCTCTTGTGGGCCGGCCTGCTGTTCAACCTGCTGGGGGGATTCGTCTCGCTGGGAGACGCGGTGGTGGG
CGCCATGGTGGGCTACCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTCACCGGCAAGGAGGGCATGGGGTATG
GCGACTTCAAGCTGCTGGCAGCCCTCGGCGCCTGGCTCGGCTGGCAAGCCTTGCCCATCGTGCTGCTGCTCTCCTCCCTG
GTCGGTGCCATCATCGGCATCGGGCTCATCGCGCTGCGCAAACACCATCAGGCCAATCCCATCCCCTTTGGCCCCTATCT
CGCCATCGCGAGCTGGGCAGCGCTGCTGTGGGGAGATAGCATCACCCGCTGGTACCTGGACTGGGTGCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	59.722	99.31	0.593
pilD	Vibrio campbellii strain DS40M4	54.007	98.966	0.534
pilD	Acinetobacter nosocomialis M2	53.957	95.862	0.517
pilD	Acinetobacter baumannii D1279779	53.597	95.862	0.514
pilD	Neisseria gonorrhoeae MS11	49.81	90.69	0.452