Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | ABNP42_RS20340 | Genome accession | NZ_CP157868 |
| Coordinates | 3927580..3927924 (-) | Length | 114 a.a. |
| NCBI ID | WP_131887525.1 | Uniprot ID | - |
| Organism | Priestia flexa strain Antcr29 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3922580..3932924
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABNP42_RS20330 (ABNP42_20300) | - | 3923556..3926171 (+) | 2616 | WP_350019687.1 | DEAD/DEAH box helicase | - |
| ABNP42_RS20335 (ABNP42_20305) | - | 3926335..3927402 (+) | 1068 | WP_131887524.1 | peptidoglycan endopeptidase | - |
| ABNP42_RS20340 (ABNP42_20310) | ssbB | 3927580..3927924 (-) | 345 | WP_131887525.1 | single-stranded DNA-binding protein | Machinery gene |
| ABNP42_RS20345 (ABNP42_20315) | - | 3928046..3928513 (+) | 468 | WP_131887526.1 | YwpF family protein | - |
| ABNP42_RS20350 (ABNP42_20320) | - | 3928984..3929418 (+) | 435 | WP_350019688.1 | helix-turn-helix transcriptional regulator | - |
| ABNP42_RS20355 (ABNP42_20325) | - | 3929439..3929729 (-) | 291 | WP_131887528.1 | hypothetical protein | - |
| ABNP42_RS20360 (ABNP42_20330) | - | 3929853..3930677 (-) | 825 | WP_131887529.1 | flagellar hook-basal body protein | - |
| ABNP42_RS20365 (ABNP42_20335) | - | 3930709..3931524 (-) | 816 | WP_350019689.1 | flagellar hook-basal body protein | - |
| ABNP42_RS20370 (ABNP42_20340) | - | 3931638..3932639 (-) | 1002 | WP_131887531.1 | rod shape-determining protein | - |
Sequence
Protein
Download Length: 114 a.a. Molecular weight: 12988.71 Da Isoelectric Point: 8.0215
>NTDB_id=1008599 ABNP42_RS20340 WP_131887525.1 3927580..3927924(-) (ssbB) [Priestia flexa strain Antcr29]
MINEVVLVGRLTRAPELKYTSEGIPFSHITVAVNRNFRNQEGEVDADFVSITLWRKNAENMTKYCDKGSIIGVVGRVQTR
TFENNLHQRTYVTEIIAEYVRFLSGKPSSPENQP
MINEVVLVGRLTRAPELKYTSEGIPFSHITVAVNRNFRNQEGEVDADFVSITLWRKNAENMTKYCDKGSIIGVVGRVQTR
TFENNLHQRTYVTEIIAEYVRFLSGKPSSPENQP
Nucleotide
Download Length: 345 bp
>NTDB_id=1008599 ABNP42_RS20340 WP_131887525.1 3927580..3927924(-) (ssbB) [Priestia flexa strain Antcr29]
TTGATTAATGAAGTAGTGTTAGTAGGGCGTTTGACACGAGCTCCTGAACTAAAATATACTTCCGAAGGAATTCCTTTTTC
TCACATTACAGTAGCTGTGAACAGAAATTTTCGTAACCAGGAAGGAGAAGTGGACGCAGATTTTGTATCAATAACGCTAT
GGCGGAAAAACGCTGAAAACATGACGAAATACTGTGATAAGGGGTCTATTATAGGAGTCGTAGGTCGTGTGCAAACACGT
ACGTTTGAAAACAACTTGCATCAACGCACTTATGTTACAGAAATTATCGCAGAATATGTTCGGTTTTTAAGCGGTAAGCC
TTCCTCACCTGAAAATCAGCCATGA
TTGATTAATGAAGTAGTGTTAGTAGGGCGTTTGACACGAGCTCCTGAACTAAAATATACTTCCGAAGGAATTCCTTTTTC
TCACATTACAGTAGCTGTGAACAGAAATTTTCGTAACCAGGAAGGAGAAGTGGACGCAGATTTTGTATCAATAACGCTAT
GGCGGAAAAACGCTGAAAACATGACGAAATACTGTGATAAGGGGTCTATTATAGGAGTCGTAGGTCGTGTGCAAACACGT
ACGTTTGAAAACAACTTGCATCAACGCACTTATGTTACAGAAATTATCGCAGAATATGTTCGGTTTTTAAGCGGTAAGCC
TTCCTCACCTGAAAATCAGCCATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
56.075 |
93.86 |
0.526 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
53.774 |
92.982 |
0.5 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
46.903 |
99.123 |
0.465 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
43.925 |
93.86 |
0.412 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
42.991 |
93.86 |
0.404 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
42.991 |
93.86 |
0.404 |
| ssbB/cilA | Streptococcus mitis SK321 |
42.056 |
93.86 |
0.395 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
42.056 |
93.86 |
0.395 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
42.056 |
93.86 |
0.395 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
42.056 |
93.86 |
0.395 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
44.792 |
84.211 |
0.377 |