Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AAN986_RS05760 Genome accession   NZ_CP157763
Coordinates   1279814..1281031 (-) Length   405 a.a.
NCBI ID   WP_016445610.1    Uniprot ID   A0AAJ1HZR1
Organism   Delftia sp. DS1230     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1274814..1286031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAN986_RS05730 - 1275645..1276601 (+) 957 WP_047217092.1 ATP-binding protein -
  AAN986_RS05735 - 1276652..1277158 (+) 507 WP_016445605.1 NUDIX domain-containing protein -
  AAN986_RS05740 - 1277169..1277405 (-) 237 WP_223275109.1 DNA gyrase inhibitor YacG -
  AAN986_RS05745 zapD 1277423..1278178 (-) 756 WP_016445607.1 cell division protein ZapD -
  AAN986_RS05750 coaE 1278268..1278906 (-) 639 WP_016445608.1 dephospho-CoA kinase -
  AAN986_RS05755 pilD 1278921..1279814 (-) 894 WP_016445609.1 A24 family peptidase Machinery gene
  AAN986_RS05760 pilC 1279814..1281031 (-) 1218 WP_016445610.1 type II secretion system F family protein Machinery gene
  AAN986_RS05765 pilB 1281070..1282812 (-) 1743 WP_034364744.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AAN986_RS05775 - 1283049..1283978 (-) 930 WP_043789750.1 polyprenyl synthetase family protein -
  AAN986_RS05780 rplU 1284209..1284520 (+) 312 WP_012207284.1 50S ribosomal protein L21 -
  AAN986_RS05785 rpmA 1284536..1284793 (+) 258 WP_012207283.1 50S ribosomal protein L27 -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44446.30 Da        Isoelectric Point: 9.3922

>NTDB_id=1008141 AAN986_RS05760 WP_016445610.1 1279814..1281031(-) (pilC) [Delftia sp. DS1230]
MATAASKGIKEFVFEWEGKDRNGKIIRGETRAGGINQVQAMLRRQGVLPSKIKKRRTRGGKRIKPKDIALFTRQMATMMK
AGVPLLQAFDIVGRGNTNPSVTRLLADIRADVETGTSLNAAYRKHPMYFDSLYCNLVEAGEAAGILEALLDRLATYMEKT
EAIKSKIKSALMYPISVIVVAFIVVTIIMIFVIPAFKEVFTSFGADLPAPTLFVMGISDVFVQWWWLIFGVIGGGLYFFM
QAWKRNERMQQFMDRTLLKVPVFGVLIEKSCVARWTRTLSTMFAAGVPLVEALDSVGGASGNAVYANATEKIQQEVSTGT
SLTVAMTNANVFPSMVLQMCAIGEESGSIDHMLGKAADFYEEEVDDMVAGLSSLMEPIIIVFLGTLIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1008141 AAN986_RS05760 WP_016445610.1 1279814..1281031(-) (pilC) [Delftia sp. DS1230]
ATGGCCACAGCCGCGTCCAAGGGAATCAAGGAATTTGTCTTCGAATGGGAAGGCAAGGATCGCAACGGCAAGATCATCCG
AGGCGAGACCCGGGCCGGGGGCATCAACCAGGTCCAGGCCATGCTGCGCCGCCAGGGCGTGCTGCCCAGCAAGATCAAGA
AGCGCCGCACACGCGGGGGCAAGAGGATCAAGCCCAAGGACATTGCGCTGTTCACCCGCCAGATGGCAACGATGATGAAG
GCGGGCGTCCCGCTGCTTCAGGCCTTCGACATTGTCGGACGGGGCAACACCAACCCCAGCGTGACGCGCCTTCTGGCCGA
TATTCGCGCCGACGTGGAGACCGGCACCTCGCTGAACGCGGCCTATCGCAAGCACCCCATGTACTTCGATAGCCTCTACT
GCAATCTGGTGGAGGCGGGCGAAGCGGCCGGTATCCTGGAAGCCCTGCTGGACCGCCTGGCCACGTACATGGAGAAGACC
GAGGCCATCAAGTCCAAGATCAAATCGGCGCTGATGTACCCGATCTCGGTCATCGTCGTGGCCTTCATCGTCGTGACCAT
CATCATGATCTTCGTGATCCCGGCCTTCAAGGAAGTGTTCACCTCGTTCGGCGCCGACCTGCCGGCACCGACGCTGTTCG
TGATGGGCATCAGCGATGTCTTTGTCCAATGGTGGTGGTTGATCTTCGGCGTGATTGGCGGCGGTCTCTACTTCTTCATG
CAGGCCTGGAAGCGCAACGAGCGCATGCAGCAATTCATGGACCGTACGCTGCTGAAGGTGCCGGTCTTTGGCGTGCTGAT
CGAGAAATCCTGCGTCGCACGCTGGACGCGCACGCTGTCGACCATGTTTGCCGCGGGCGTCCCATTGGTCGAGGCACTGG
ATTCTGTCGGCGGCGCATCCGGCAATGCCGTGTATGCCAATGCCACGGAAAAGATCCAGCAGGAAGTCTCCACCGGCACC
AGTCTCACCGTGGCCATGACCAATGCCAATGTCTTTCCGTCCATGGTGCTGCAGATGTGCGCCATCGGCGAGGAATCCGG
CTCTATCGACCATATGCTGGGCAAGGCGGCCGATTTCTATGAAGAAGAGGTCGATGACATGGTGGCTGGCCTGTCCAGTC
TGATGGAGCCCATCATCATTGTTTTCCTGGGCACCCTCATCGGCGGCATCGTGGTTTCGATGTATCTACCCATCTTCAAG
CTGGGCCAGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.198

99.753

0.551
  pilG Neisseria gonorrhoeae MS11

50.25

98.765

0.496
  pilG Neisseria meningitidis 44/76-A

50

98.765

0.494
  pilC Legionella pneumophila strain ERS1305867

50.253

97.778

0.491
  pilC Acinetobacter baylyi ADP1

49.246

98.272

0.484
  pilC Acinetobacter baumannii D1279779

47.859

98.025

0.469
  pilC Vibrio cholerae strain A1552

40.302

98.025

0.395
  pilC Vibrio campbellii strain DS40M4

39.295

98.025

0.385
  pilC Thermus thermophilus HB27

37.5

98.765

0.37

Multiple sequence alignment